Protein Alignment sqd and msi1b

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: XP_073765489.1
• Gene: msi1b / 541389
• ZFINID: ZDB-GENE-050320-86
• Length: 349
• Species: Danio rerio
• Alignment Length: 264
• Identity: 95/264 - (35%)
• Similarity: 133/264 - (50%)
• Gaps: 39/264 - (14%)

  Fly    38 TNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFI 102
            :.||..|.| :|....|..|:|:|||||:||::.|:|:|.|:||::...|..||.|.|||||.|:
Zfish     3 SEGSQSNLS-SSDSPHDPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFV 66

  Fly   103 VFTNTEAIDKVSAADEHIINSKKVDPK---------KAKARHGKIFVGGLTTEISDEEIKTYFGQ 158
            .|.:...:|||.|...|.::||.:|||         |...|..|||||||:...:.|::|.||.|
Zfish    67 TFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQ 131

  Fly   159 FGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGM 223
            ||.:.:..:.|||..::.:||.|:||::|.||..:.:....:|..|.|:.|:|.||......|..
Zfish   132 FGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSS 196

  Fly   224 RGGPR---GGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGAGGYGDYYAGGYYN----GY 281
            ||..|   .||.....|.|..                  ||.|:.|    ..|||..|.    ||
Zfish   197 RGRARVMPYGMDAFMLGIGML------------------GYPGFQA----TTYAGRSYTSLTPGY 239

  Fly   282 DYGY 285
            .|.:
Zfish   240 TYQF 243

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	33/70 (47%)
		RRM2_hnRNPD_like	137..211	CDD:240775	29/73 (40%)
msi1b	XP_073765489.1	None