Protein Alignment sqd and Hnrnpdl

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_057899.2
• Gene: Hnrnpdl / 50926
• MGIID: 1355299
• Length: 420
• Species: Mus musculus
• Alignment Length: 345
• Identity: 133/345 - (38%)
• Similarity: 183/345 - (53%)
• Gaps: 60/345 - (17%)

  Fly    22 ADGPGS-------ENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKY 79
            |||..:       .|.:..|.||...:|.||       .||.|:|:|||||:|::|:|.::..::
Mouse   114 ADGSATMEDMNEYSNIEEFAEGSKINASKNQ-------QDDGKMFIGGLSWDTSKKDLTEYLSRF 171

  Fly    80 GEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHG-----KIF 139
            ||:....:||||.|||||||.|::|.:..::|||....||.::.|.:|||:|||..|     |:|
Mouse   172 GEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVF 236

  Fly   140 VGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGK 204
            ||||:.:.|:|:||.|||.||.|..:|:|.|.:.::|:||||||:..|:.|..||::...:|...
Mouse   237 VGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSG 301

  Fly   205 EVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRG---------GYNNQWDGQGSYGGYGGG 260
            :.::|.|.||...:.....:.|.||...|||||..|||         |:||.:| || ||.|...
Mouse   302 KCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNNYYD-QG-YGNYNSA 364

  Fly   261 YGG-YGAGGYGDYYAGGYYNGYDYGYDGYGYGGGFEGNGYGGGGGGNMGGGRGGPRGGGGPKGGG 324
            ||| ....|||.|    .|.||:||  .|||     |.||....|.....|:.
Mouse   365 YGGDQNYSGYGGY----DYTGYNYG--NYGY-----GQGYADYSGQQSTYGKA------------ 406

  Fly   325 GFNGGKQRGGGGRQQRHQPY 344
                  .||||..|..:|||
Mouse   407 ------SRGGGNHQNNYQPY 420

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	31/70 (44%)
		RRM2_hnRNPD_like	137..211	CDD:240775	32/73 (44%)
Hnrnpdl	NP_057899.2	RRM1_hnRPDL	149..224	CDD:410152	34/74 (46%)
		RRM2_hnRPDL	234..308	CDD:409998	32/73 (44%)