Protein Alignment sqd and msi1a

DIOPT Version :9

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: XP_005171799.1
• Gene: msi1a / 503755
• ZFINID: ZDB-GENE-050306-36
• Length: 157
• Species: Danio rerio
• Alignment Length: 135
• Identity: 55/135 - (40%)
• Similarity: 83/135 - (61%)
• Gaps: 10/135 - (7%)

  Fly    38 TNGSSDNQSAASGQRDDDR-KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAF 101
            |.||..:.|:::.....|. |:|:|||||:||::.|:::|.|:||::...|..||.|.|||||.|
Zfish     3 TEGSQSSLSSSTQDSPHDPCKMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGF 67

  Fly   102 IVFTNTEAIDKVSAADEHIINSKKVDPK---------KAKARHGKIFVGGLTTEISDEEIKTYFG 157
            :.:.:...:|||.|.:.|.::||.:|||         |...|..|||||||:...:.|::|.||.
Zfish    68 VTYVDQTGVDKVLAQNRHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFD 132

  Fly   158 QFGNI 162
            |||.:
Zfish   133 QFGKV 137

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	31/70 (44%)
		RRM2_hnRNPD_like	137..211	CDD:240775	14/26 (54%)
msi1a	XP_005171799.1	RRM	<18..154	CDD:223796	51/120 (43%)
		RRM1_MSI	24..98	CDD:241020	33/73 (45%)
		RRM_SF	108..>144	CDD:302621	15/30 (50%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG4205
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.900