Protein Alignment sqd and msi1

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: XP_012816886.1
• Gene: msi1 / 496961
• XenbaseID: XB-GENE-490596
• Length: 347
• Species: Xenopus tropicalis
• Alignment Length: 338
• Identity: 100/338 - (29%)
• Similarity: 138/338 - (40%)
• Gaps: 77/338 - (22%)

  Fly    54 DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADE 118
            |..|:|:|||||:||::.||::|..:|:::...|..||.|.|||||.|:.|.:...:|||.|...
 Frog    18 DPCKMFIGGLSWQTTQEGLREYFSHFGDVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 82

  Fly   119 HIINSKKVDPK---------KAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKS 174
            |.::||.:|||         |...|..|||||||:...:.|::|.||.|||.:.:..:.|||..:
 Frog    83 HELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTN 147

  Fly   175 QRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPR---GGMRGGRG 236
            :.:||.|:||:.|.:|..:......:|..|.|:.|:|.||......|.:||..|   .||.....
 Frog   148 RHRGFGFVTFEGEDIVEKVCDIHFHEINNKMVECKKAQPKEVMSPTGSVRGRSRVMPYGMDAFML 212

  Fly   237 GYGGRGGYNNQWDGQGSYGGYGGGYGGYGAGGYGDYYAGGYYNGYDYGYDGY------------- 288
            |.|..                  ||.|:.|..|......|...||.|.:..:
 Frog   213 GIGML------------------GYPGFQAATYASRSYTGIAPGYTYQFPEFRVERTPLPGAPVL 259

  Fly   289 ---------GYG------------------GGFEGNGYGGG-----GGGNMGGGRGGPRGGGGPK 321
                     .||                  |||.|....|.     |..|.............|.
 Frog   260 PELTAIPLTAYGPVAAAAAAVVRGSTPTRTGGFLGTSSPGPMAELYGAANQESAVSSYISAASPA 324

  Fly   322 GGGGFNGGKQRGG 334
            ...||  |...||
 Frog   325 PSTGF--GHSLGG 335

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	31/70 (44%)
		RRM2_hnRNPD_like	137..211	CDD:240775	28/73 (38%)
msi1	XP_012816886.1	RRM1_MSI1	20..96	CDD:241203	34/75 (45%)
		PABP-1234	<32..324	CDD:130689	85/309 (28%)
		RRM2_MSI	110..183	CDD:240769	27/72 (38%)