DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and srsf1

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_001006919.1 Gene:srsf1 / 448766 XenbaseID:XB-GENE-486875 Length:267 Species:Xenopus tropicalis


Alignment Length:212 Identity:52/212 - (24%)
Similarity:70/212 - (33%) Gaps:92/212 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKG--FCFITFDSEQVVTDLLKTPKQ 199
            :|:||.|..:|..::|:..|.::|.|.::::     |::|.|  |.|:.|:..:...|.:     
 Frog    17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-----KNRRGGPPFAFVEFEDPRDAEDAV----- 71

  Fly   200 KIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGY 264
                                                                            |
 Frog    72 ----------------------------------------------------------------Y 72

  Fly   265 GAGGYGDYYAGGYYNGYDYGYDGYGYGGGF--EGNGYGGGGGGNMGGGRGGPRGGGGPKGGGGFN 327
            |..|              |.||||.....|  .|.|.||.|||..|||.||..||||..||||..
 Frog    73 GRDG--------------YDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGG 123

  Fly   328 GGKQRGGGGRQQRHQPY 344
            ||..||..|...|...|
 Frog   124 GGAPRGRYGPPSRRSEY 140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763
RRM2_hnRNPD_like 137..211 CDD:240775 16/75 (21%)
srsf1NP_001006919.1 RRM1_SRSF1 12..90 CDD:410010 25/160 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 90..137 25/46 (54%)
RRM2_SRSF1 132..215 CDD:410160 3/9 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..267
Blue background indicates that the domain is not in the aligned region.

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