Protein Alignment sqd and rbm38

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_001006916.1
• Gene: rbm38 / 448763
• XenbaseID: XB-GENE-489545
• Length: 219
• Species: Xenopus tropicalis
• Alignment Length: 248
• Identity: 56/248 - (22%)
• Similarity: 82/248 - (33%)
• Gaps: 92/248 - (37%)

  Fly    57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHII 121
            |:|||||.:.||:..||.:|..:|:|:...|.||.|||:|||:.|:..::..|.::.......||
 Frog    12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPNPII 76

  Fly   122 NSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDS 186
            :.:|.:...|                       |.|.            |.::.:..|   |...
 Frog    77 DGRKANVNLA-----------------------YLGA------------KPRNLQSAF---TIGV 103

  Fly   187 EQVVTDLLKTP----KQKI---AGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGY 244
            :|:....::.|    .|.|   |..:..|...||.|..|
 Frog   104 QQLHPAFIQRPFGLTPQYIYPPAIVQPSVVIPTPIPSLQ-------------------------- 142

  Fly   245 NNQWDGQGSYGGYGGGYGGYGAGGYG-DYYAGGYYNGYDY------GYDGYGY 290
                          ..|..|.|.... .:|....|..|.|      ||.||||
 Frog   143 --------------SPYIDYNAATQAFTHYTTAAYEQYPYAASPATGYMGYGY 181

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	26/70 (37%)
		RRM2_hnRNPD_like	137..211	CDD:240775	11/80 (14%)
rbm38	NP_001006916.1	RRM_RBM24_RBM38_like	11..86	CDD:409818	27/73 (37%)
		PABP-1234	<23..187	CDD:130689	49/237 (21%)