DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment sqd and rbm34

DIOPT Version :9

Sequence 1:	NP_731825.1	Gene:	sqd / 41666	FlyBaseID:	FBgn0263396	Length:	344	Species:	Drosophila melanogaster
Sequence 2:	NP_001004890.1	Gene:	rbm34 / 448232	XenbaseID:	XB-GENE-5895036	Length:	412	Species:	Xenopus tropicalis

Alignment Length:	221	Identity:	56/221 - (25%)
Similarity:	94/221 - (42%)	Gaps:	61/221 - (27%)

- Green bases have known domain annotations that are detailed below.

  Fly    41 SSDNQSAASGQRDDD---------------------RKLFVGGLSWETTEKELRDHFGKYGEIES 84
            |..|||.     |||                     |.:|||.|..:.|::.|:..|.::|.|||
Frog   137 SKKNQSL-----DDDGVVVQPRKRKVNRAEERIKNKRTVFVGNLPADYTKQMLKSLFKEFGHIES 196

  Fly    85 -------------------INVKTDPQTGRSRGFAFIVFTN----TEAIDKVSA---ADEHIINS 123
                               |..|..|:  |....|:|||.:    ::|:.:..|   :..||
Frog   197 MRFRSVARAEANLSRKVAAIQRKVHPK--RKNINAYIVFKDESSASQALKRNGAEVGSGFHI--- 256

  Fly   124 KKVDPKKAKARHG---KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFD 185
             :||....::.|.   ..|:|.|..||.:|.::.:|.:.|.:..|.:..|::....|||.::.|:
Frog   257 -RVDIASKRSSHDNKRSAFIGNLPYEIEEEAVRDHFSECGKVQGVRIIRDQKTGIGKGFGYVLFE 320

  Fly   186 SEQVVTDLLKTPKQKIAGKEVDVKRA 211
            |...|...||....:::|:::.|||:
Frog   321 SADAVQLALKLNNSELSGRKIRVKRS 346

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	25/96 (26%)
sqd	NP_731825.1	RRM2_hnRNPD_like	137..211	CDD:240775	21/73 (29%)
rbm34	NP_001004890.1	RRM1_RBM34	168..259	CDD:240840	24/96 (25%)
rbm34	NP_001004890.1	RRM2_RBM34	272..344	CDD:240841	19/71 (27%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910