Protein Alignment sqd and Rb97D

DIOPT Version :9

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_001014671.1
• Gene: Rb97D / 43231
• FlyBaseID: FBgn0004903
• Length: 471
• Species: Drosophila melanogaster
• Alignment Length: 230
• Identity: 77/230 - (33%)
• Similarity: 113/230 - (49%)
• Gaps: 38/230 - (16%)

  Fly    41 SSDNQSAASGQRDDD------RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGF 99
            |:|....|..:.||.      ||||:|||:..|||:.|:..:|::|::..:.|..|..|.|||||
  Fly    11 SADVIVLADREEDDICELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGF 75

  Fly   100 AFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARH-----------GKIFVGGLTTEISDEEIK 153
            .||.:|.:..:|:......|||:.|.|:.|:|..|.           .|:|||||.....:|.::
  Fly    76 GFITYTKSLMVDRAQENRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLR 140

  Fly   154 TYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRA---TPKP 215
            .||.||||:|.|::..||...:|:||.|:.||....|...:...:..|....||||::   ..|.
  Fly   141 EYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKK 205

  Fly   216 ENQMMGGM--------------RGG----PRGGMR 232
            |.|..||:              :||    |.|.|:
  Fly   206 EKQQPGGLANAIKPSLNQQQQQQGGGQQPPNGNMQ 240

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	28/70 (40%)
		RRM2_hnRNPD_like	137..211	CDD:240775	29/73 (40%)
Rb97D	NP_001014671.1	RRM1_hnRNPA_like	33..110	CDD:241022	31/76 (41%)
		RRM2_hnRNPA_like	124..196	CDD:240774	27/71 (38%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45463965
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840