Protein Alignment sqd and hnrnpdl

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_001315423.1
• Gene: hnrnpdl / 406701
• ZFINID: ZDB-GENE-040426-2717
• Length: 296
• Species: Danio rerio
• Alignment Length: 327
• Identity: 126/327 - (38%)
• Similarity: 180/327 - (55%)
• Gaps: 45/327 - (13%)

  Fly    28 ENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQ 92
            |.||........||..|   ||..::||.|:|:|||||:|::|:|.|:..::||:....:||||.
Zfish     5 EQGDFSTDEFPEGSKIN---ASKNQEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPL 66

  Fly    93 TGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHG-----KIFVGGLTTEISDEEI 152
            |||||||.|::|.:.|::|:|....||.::.|.:|||:|||..|     |:|||||:.:|::|::
Zfish    67 TGRSRGFGFVLFKDAESVDRVLELTEHKLDGKLIDPKRAKAIKGKEPPKKVFVGGLSPDITEEQL 131

  Fly   153 KTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPEN 217
            :.|||.:|.|..:|:|.|.:.::|:||||:||..|:.|..||:....:|...:.::|.|.||
Zfish   132 REYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLENRYHQIGSGKCEIKVAQPK--- 193

  Fly   218 QMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGAGGYGDYYAGGY--YNG 280
            ::....:...| |..|||||:.||||     .|||...||...||....||||:.|..||  |:|
Zfish   194 EVYRQQQNRDR-GFGGGRGGFRGRGG-----RGQGFNQGYNNYYGQNYGGGYGNGYNQGYNGYSG 252

  Fly   281 YD---YGYDGYGYGGGFEGNGYGGGGGGNMGGGRGGPRGGGGPKGGGGFNGGKQRGGGGRQQRHQ 342
            ||   |.|..||||.|::  .|.|....                     .|...|..|..|..:|
Zfish   253 YDYSGYNYQNYGYGQGYD--DYSGQQSS---------------------YGKASRDSGNHQNSYQ 294

  Fly   343 PY 344
            ||
Zfish   295 PY 296

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	32/70 (46%)
		RRM2_hnRNPD_like	137..211	CDD:240775	29/73 (40%)
hnrnpdl	NP_001315423.1	RRM_SF	31..106	CDD:473069	35/74 (47%)
		RRM2_hnRPDL	116..190	CDD:409998	29/73 (40%)