DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and hnrnpabb

DIOPT Version :9

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_998467.1 Gene:hnrnpabb / 406594 ZFINID:ZDB-GENE-040426-2516 Length:309 Species:Danio rerio


Alignment Length:330 Identity:137/330 - (41%)
Similarity:186/330 - (56%) Gaps:33/330 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAENKQVDTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDN-QSAASGQRDDDRKLFVGGLS 64
            ||:.:.::|..||.:            ||.:.|.|...||:.:. |..||...:|..|:||||||
Zfish     1 MADEQFMETSENGNE------------ENLNGGEAAGENGAGEGLQIDASKCEEDAGKMFVGGLS 53

  Fly    65 WETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPK 129
            |:|::|:|:|:|.|:||:....:|.|..|||||||.||:|..::::|:|....||.::.:::|||
Zfish    54 WDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQIDPK 118

  Fly   130 KA----KARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVV 190
            :|    |....|||||||..|.::|:|:.|||.||.|..:|:|.|.:.|:|:||.||||..|..|
Zfish   119 RAMAIKKEPVKKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAV 183

  Fly   191 TDLLKTPKQKIAGKEVDVKRATPKP-ENQMMGGMRGGPRGGMRGGRGGYG--GRGGYNNQWDGQG 252
            ..:|:.....:.|.:.::|.|.||. ..|...|.|||..||...||||.|  ...||||.|: ||
Zfish   184 KKILEKKYHNVCGSKCEIKIAQPKEIYQQQQFGARGGGFGGRGRGRGGPGQSWNQGYNNYWN-QG 247

  Fly   253 SYGGYGGGYGGYGAGGYGDYYAGGYYNGYDYGYDGYGYGGGFEGNGYGGGGGGNMGGGRGGPRGG 317
             |||.|.|||  |..|||.|  |||.| |||....||||.|::....|....|..      ||.|
Zfish   248 -YGGQGYGYG--GQQGYGGY--GGYGN-YDYSSGYYGYGSGYDYTDQGAASYGKT------PRRG 300

  Fly   318 GGPKG 322
            |...|
Zfish   301 GHQSG 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM_SF 58..129 CDD:302621 32/70 (46%)
RRM2_hnRNPD_like 137..211 CDD:240775 32/73 (44%)
hnrnpabbNP_998467.1 CBFNT 2..45 CDD:285369 14/54 (26%)
RRM1_hnRNPAB 46..120 CDD:241201 35/73 (48%)
RRM_SF 125..204 CDD:302621 33/78 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 84 1.000 Domainoid score I8173
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 237 1.000 Inparanoid score I3348
OMA 1 1.010 - - QHG45859
OrthoDB 1 1.010 - - D496221at33208
OrthoFinder 1 1.000 - - FOG0001417
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48033
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4769
SonicParanoid 1 1.000 - - X985
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1111.110

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