Protein Alignment sqd and tia1

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: XP_012814227.2
• Gene: tia1 / 394890
• XenbaseID: XB-GENE-1002876
• Length: 389
• Species: Xenopus tropicalis
• Alignment Length: 350
• Identity: 77/350 - (22%)
• Similarity: 127/350 - (36%)
• Gaps: 98/350 - (28%)

  Fly    22 ADGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDR-KLFVGGLSWETTEKELRDHFGKYGEIESI 85
            |..|.|:..||          ::.|..|..|..|. .:|||.||.|.|..:::..|..:|.|...
 Frog    81 ATTPSSQKKDA----------NSSSVVSTLRSQDHFHVFVGDLSPEITTDDIKAAFAPFGRISDA 135

  Fly    86 NVKTDPQTGRSRGFAFIVFTNT-EAIDKVSAADEHIINSKKV----------DPKKAKARHGK-- 137
            .|..|..||:|:|:.|:.|.|. :|.:.::......:..:::          .||.....:.|
 Frog   136 RVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQL 200

  Fly   138 ---------------IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSE 187
                           ::.||:|:.::::.::..|..||.|:||.:..|      ||:.|:.|.|.
 Frog   201 TYEEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEVRVFPD------KGYSFVRFSSH 259

  Fly   188 QVVTDLLKTPKQKIAGKEVD---VK----RATP---KPENQMMGGMRGGPRGGMRGGRGGYGGRG 242
            :.....:.:    :.|..::   ||    :.||   .|..|:...
 Frog   260 ESAAHAIVS----VNGTTIEGHVVKCYWGKETPDMLNPVQQVSEA-------------------- 300

  Fly   243 GYNNQWDGQGSYGGYGGGYGGYGAGGYGDYYAGGY----YNGYDYGYDGYGY------GGGFEGN 297
               :|......||.:|..||  ||...|.|...|:    |..|...:...||      ...:.|.
 Frog   301 ---SQISFPPPYGQWGQWYG--GAQQIGQYVPNGWQMPAYGVYGQAWSQQGYSQTPSSAATWVGP 360

  Fly   298 GYG----GGGGGNMGGGRGGPRGGG 318
            .||    .|..|.:...:.|.|..|
 Frog   361 NYGVQPQPGQNGTLITNQTGYRMAG 385

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	20/81 (25%)
		RRM2_hnRNPD_like	137..211	CDD:240775	19/97 (20%)
tia1	XP_012814227.2	RRM1_TIA1	8..81	CDD:410027	76/349 (22%)
		RRM2_TIA1	104..181	CDD:410030	21/76 (28%)
		RRM3_TIAR	214..286	CDD:241064	18/81 (22%)