Protein Alignment sqd and msi2b

DIOPT Version :9

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_957403.1
• Gene: msi2b / 394084
• ZFINID: ZDB-GENE-040426-1268
• Length: 408
• Species: Danio rerio
• Alignment Length: 330
• Identity: 112/330 - (33%)
• Similarity: 151/330 - (45%)
• Gaps: 69/330 - (20%)

  Fly    23 DGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINV 87
            :|.||:    ..:||.|.|          :.|..|:|:|||||:|:...|||:|.|:|||....|
Zfish     2 EGDGSQ----ATSGSPNDS----------QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMV 52

  Fly    88 KTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPK---------KAKARHGKIFVGGL 143
            ..||.|.|||||.|:.|.:..::|||.|...|.::||.:|||         |...|..|||||||
Zfish    53 MRDPTTKRSRGFGFVTFADAASVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGL 117

  Fly   144 TTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDV 208
            :.....|::|.||.|||.:.:..:.|||..::.:||.|:||::|.||..:.:....:|..|.|:.
Zfish   118 SANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVEC 182

  Fly   209 KRATPKPENQMMGGMRGGPRG------------GMRG--------GRGGYGGRGGYNNQWDG--Q 251
            |:|.|| |.....|.||..||            ||..        |||..|....|:.|:.|  .
Zfish   183 KKAQPK-EVMFPPGTRGRARGLPYTMDAFMLGMGMLSYPNIVATYGRGYTGFAPSYSYQFPGFPA 246

  Fly   252 GSYG----------GYGGGYGGYGAGGYGDYYAGGYYNGYDYGYDGYGY--------GGGFEGNG 298
            .:||          ..|.|.|..|.|||     ..|......|:..||:        |..|....
Zfish   247 TAYGPVAAAAAVAAARGSGRGARGRGGY-----AAYPQSTGPGFPDYGFYSSPSDQRGPPFSFAD 306

  Fly   299 YGGGG 303
            ||..|
Zfish   307 YGSLG 311

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	34/70 (49%)
		RRM2_hnRNPD_like	137..211	CDD:240775	29/73 (40%)
msi2b	NP_957403.1	RRM	<2..162	CDD:223796	69/173 (40%)
		RRM1_MSI	23..97	CDD:241020	36/73 (49%)
		RRM2_MSI	111..184	CDD:240769	28/72 (39%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG4205
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.810