DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and srsf1b

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_956887.2 Gene:srsf1b / 393565 ZFINID:ZDB-GENE-040426-1467 Length:245 Species:Danio rerio


Alignment Length:186 Identity:39/186 - (20%)
Similarity:59/186 - (31%) Gaps:90/186 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKG--FCFITFDSEQVVTDLLKTPKQ 199
            :|:||.|..:|..::::..|.::|.|.::::     |::|.|  |.|:.|:..:...|.:     
Zfish    16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDL-----KNRRGGPPFAFVEFEDPRDAEDAV----- 70

  Fly   200 KIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGY 264
                                                                            |
Zfish    71 ----------------------------------------------------------------Y 71

  Fly   265 GAGGYGDYYAGGYYNGYDYGYDGYGYGGGFEGNGYGGGGGGNMGGGRGGPRGGGGP 320
            |..|              |.||||.....|..:|.|||.||..|||.|.|||..||
Zfish    72 GRDG--------------YDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGP 113

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763
RRM2_hnRNPD_like 137..211 CDD:240775 15/75 (20%)
srsf1bNP_956887.2 RRM1_SRSF1 11..89 CDD:410010 24/160 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 89..116 15/25 (60%)
RRM2_SRSF1 112..195 CDD:410160 2/2 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 192..245
Blue background indicates that the domain is not in the aligned region.

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