DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and srsf10b

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_956827.1 Gene:srsf10b / 393505 ZFINID:ZDB-GENE-040426-1415 Length:248 Species:Danio rerio


Alignment Length:100 Identity:28/100 - (28%)
Similarity:52/100 - (52%) Gaps:9/100 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 HGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQ 199
            :..:||..::.|...|:::..||::|.||:|.:|.|....:.:||.:|.|:..:...|.|....:
Zfish     9 NSSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAEDALHNLDR 73

  Fly   200 K-IAGKEVDVK-----RATPKPENQMMGGMRGGPR 228
            | :.|::::::     |.||   .||....|..||
Zfish    74 KWVCGRQIEIQFAQGDRKTP---GQMKNKERSSPR 105

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763
RRM2_hnRNPD_like 137..211 CDD:240775 20/79 (25%)
srsf10bNP_956827.1 RRM_SRSF10 5..99 CDD:409975 25/92 (27%)
Blue background indicates that the domain is not in the aligned region.

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