Protein Alignment sqd and hnrnpa1a

DIOPT Version :9

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: XP_021335234.1
• Gene: hnrnpa1a / 393467
• ZFINID: ZDB-GENE-040426-1546
• Length: 445
• Species: Danio rerio
• Alignment Length: 405
• Identity: 135/405 - (33%)
• Similarity: 174/405 - (42%)
• Gaps: 131/405 - (32%)

  Fly    56 RKLFVGGLSWETTEKELRDHFGKYGEIESI----------------------------NVKTDPQ 92
            ||||:||||:|||::.||.||.::|.:...                            .|..||.
Zfish    38 RKLFIGGLSFETTDESLRAHFEQWGTLTDCVVSPSAAIHMLMYEREEHLKVAGFLYCSQVMRDPN 102

  Fly    93 TGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHG-----------KIFVGGLTTE 146
            |.|||||.|:.:::...:|....|..|.::.:.|:||:|.:|..           |:||||:..:
Zfish   103 TKRSRGFGFVTYSSVGEVDAAMDARPHKVDGRAVEPKRAVSREDSSKPGAHSTVKKMFVGGIKED 167

  Fly   147 ISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRA 211
            ..:|.::.||||||.|.||.:..:|...:|:||.|||||....|..::......:.|...:|::|
Zfish   168 TDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRKA 232

  Fly   212 TPKPE-NQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGA-GGYGDYYA 274
            ..:.| |::....||| |||..|..||..||||      |.|..|||||||||.|. ||.|.|..
Zfish   233 LSREEMNRVSMNSRGG-RGGGGGSGGGNFGRGG------GGGGGGGYGGGYGGGGGRGGGGGYGG 290

  Fly   275 GGYYNGY------------------------------------DYGYDGYGYGGG----FEGNGY 299
            |..||||                                    .||..|.|||||    :..||.
Zfish   291 GDGYNGYGGGNGISTDKSGYGGGGPNYGGNRGYGSGGGGGGGGGYGNQGGGYGGGGYDNYNNNGG 355

  Fly   300 GGGGGGNMGGGR----------------------------------------GGPRG---GGGPK 321
            |||||||.|||.                                        |||.|   |||..
Zfish   356 GGGGGGNFGGGNFGGGGDYNDFGNYNNQSSSNYGPMKGGNYGGGGGGGGRSGGGPYGGGYGGGSG 420

  Fly   322 GGGGFNGGKQRGGGG 336
            ||||:.||...||||
Zfish   421 GGGGYGGGSGGGGGG 435

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	28/98 (29%)
		RRM2_hnRNPD_like	137..211	CDD:240775	27/73 (37%)
hnrnpa1a	XP_021335234.1	RRM_SF	36..144	CDD:327398	33/105 (31%)
		RRM_SF	157..233	CDD:327398	27/75 (36%)
		HnRNPA1	376..>392	CDD:314495	0/15 (0%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.910