Protein Alignment sqd and tardbpa

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: XP_073794270.1
• Gene: tardbpa / 386630
• ZFINID: ZDB-GENE-031030-1
• Length: 401
• Species: Danio rerio
• Alignment Length: 329
• Identity: 93/329 - (28%)
• Similarity: 135/329 - (41%)
• Gaps: 73/329 - (22%)

  Fly    43 DNQSAASG-------QRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFA 100
            |...|||.       |:..|  |.|.||.|:|||::|:|:||.:||:..:.||.|.::|.|:||.
Zfish    87 DEMDAASAVKIKRGIQKTSD--LIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFG 149

  Fly   101 FIVFTNTEAIDKVSAADEHIINSKKVDPKKAKA-------------RHGKIFVGGLTTEISDEEI 152
            |:.||:.|...|| .:..|:|:.:..|.|...:             |..|:|||..|.:::.:|:
Zfish   150 FVRFTDYETQIKV-MSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMRSRKVFVGRCTEDMTADEL 213

  Fly   153 KTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVV-----TDLLKTPKQKIAGKEVDVKRAT 212
            :.:|.|:|.:.:|.:|     ...:.|.|:||..:||.     .||:      |.|..|.:..|.
Zfish   214 RQFFMQYGEVTDVFIP-----KPFRAFAFVTFADDQVAQSLCGEDLI------IKGTSVHISNAE 267

  Fly   213 PKPEN--QMMGGMRGGPRGGMRGGRGGYGGRG-GYNNQWDGQGSYGGY----------------G 258
            ||..|  |||.          ||..|||||:| |.:...:...::|..                .
Zfish   268 PKHNNSRQMMD----------RGRFGGYGGQGFGSSRSPNSNVNFGALNLNPAMMAAAQAALQSS 322

  Fly   259 GGYGGYGAGGYGDYYAGGYYNGYDYGYDGYGYGGGFEGNGYGGGGGGNMGGGRGGPRGGGGPKGG 323
            .|..|..|.......|.|.......|............|.|..|....:|.|     .|......
Zfish   323 WGMMGMLANQQNQTPASGTNPSGQSGSRDQTQNYSASSNNYNAGSSAALGWG-----AGTNSAAA 382

  Fly   324 GGFN 327
            ||||
Zfish   383 GGFN 386

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	30/70 (43%)
		RRM2_hnRNPD_like	137..211	CDD:240775	22/78 (28%)
tardbpa	XP_073794270.1	None