Protein Alignment sqd and CG3594

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_523855.1
• Gene: CG3594 / 37964
• FlyBaseID: FBgn0035063
• Length: 250
• Species: Drosophila melanogaster
• Alignment Length: 254
• Identity: 59/254 - (23%)
• Similarity: 98/254 - (38%)
• Gaps: 90/254 - (35%)

  Fly     3 ENKQVDTE--INGEDFTKDVTADGPGSENGDAGAAGS-TNGSSDNQSAASGQRDDDR-------- 56
            |...||.|  .|..| .:|..::.....:.:|.|.|| .:|:.:.:||.:||...|:
  Fly    45 EGTYVDKEDGRNPSD-PEDSKSEDEAKSDDEAAAEGSAASGAEEEESAENGQITSDQLSSLLRGA 108

  Fly    57 ------KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFI------VFTN--- 106
                  .|:|..|::|||:.:|..||...|.::||.:   |:..|. ||||:      .|.|
  Fly   109 SKTNRHVLYVTNLNFETTKDDLELHFSAAGTVKSIRI---PKKRRG-GFAFVEMADLSSFQNAFQ 169

  Fly   107 ---------------TEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYF 156
                           :||..|.||..::||..|  :.|.|:.|             ::::..|..
  Fly   170 LHNTELQGRNIKVQISEAGKKKSANKKNIIKQK--NRKLAEMR-------------NEQKTFTKS 219

  Fly   157 GQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKP 215
            |:|         :||                    ||.|...:::..::...|:..|:|
  Fly   220 GKF---------YDK--------------------DLKKEKAKEMLARKRWRKKPAPRP 249

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	28/94 (30%)
		RRM2_hnRNPD_like	137..211	CDD:240775	9/73 (12%)
CG3594	NP_523855.1	SF-CC1	36..>197	CDD:273721	42/156 (27%)
		RRM	116..187	CDD:440488	20/74 (27%)