Protein Alignment sqd and Dazap1

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: XP_006241030.1
• Gene: Dazap1 / 362836
• RGDID: 1305280
• Length: 406
• Species: Rattus norvegicus
• Alignment Length: 414
• Identity: 120/414 - (28%)
• Similarity: 161/414 - (38%)
• Gaps: 130/414 - (31%)

  Fly    49 SGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKV 113
            |...|:..|||||||.|.||::.||.:|.:|||:....:..|..|.:||||.|:.|.:...:..|
  Rat     3 SAGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67

  Fly   114 SAADEHIINSKKVDPK----------KAKARHG-------------KIFVGGLTTEISDEEIKTY 155
            .|:..|.::.:.:|||          :.:.:.|             ||||||:.....:.|::.|
  Rat    68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREY 132

  Fly   156 FGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMM 220
            |.:||.:.||.|.:|.:|.:.:||.||||:.||.|...:......|.||:|:||||.|:......
  Rat   133 FKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQA 197

  Fly   221 GGMRGGPRGGMR-------GGRG--------GYGGRGGYNNQWDGQG-SYGGYG----------- 258
            .|..|..:.|.|       |..|        |||.:|    .|...| :.||||
  Rat   198 PGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYGPQG----MWVPAGQAIGGYGPPPAGRGAPPP 258

  Fly   259 -------------GGY-------GGYGAG-----GYG------DYYA-----------GGYYNGY 281
                         ||:       .||||.     |||      |.:|           |.....:
  Rat   259 PPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAF 323

  Fly   282 -------------------DYGYDGYGYGGGFEGNGYGGGGGGNMGGGRGGPR--GGGGPKGGGG 325
                               |:.|..||||....|.|.|...........|||.  |.|||..||
  Rat   324 PPPPSQAAPDMSKPPTAQPDFPYGQYGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGG- 387

  Fly   326 FNGGKQRGGGGRQQRH-----QPY 344
                   .|.||.|.|     .||
  Rat   388 -------SGFGRGQNHNVQGFHPY 404

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	27/70 (39%)
		RRM2_hnRNPD_like	137..211	CDD:240775	31/73 (42%)
Dazap1	XP_006241030.1	RRM1_DAZAP1	11..92	CDD:409988	30/80 (38%)
		RRM2_DAZAP1	111..190	CDD:409765	33/78 (42%)