DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and Hnrnpa2b1

DIOPT Version :9

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_001098083.2 Gene:Hnrnpa2b1 / 362361 RGDID:1310403 Length:353 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM_SF 58..129 CDD:302621
RRM2_hnRNPD_like 137..211 CDD:240775
Hnrnpa2b1NP_001098083.2 Nuclear localization signal. /evidence=ECO:0000250|UniProtKB:P22626, ECO:0000255 9..15
RRM1_hnRNPA2B1 19..99 CDD:410155
RRM2_hnRNPA2B1 112..191 CDD:409995
Disordered. /evidence=ECO:0000269|PubMed:24098712 193..353
HnRNPA1 302..326 CDD:402981
Nuclear targeting sequence. /evidence=ECO:0000250|UniProtKB:P22626 308..347
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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