Protein Alignment sqd and Msi2

DIOPT Version :9

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: XP_038943587.1
• Gene: Msi2 / 360596
• RGDID: 1560397
• Length: 354
• Species: Rattus norvegicus
• Alignment Length: 356
• Identity: 118/356 - (33%)
• Similarity: 157/356 - (44%)
• Gaps: 75/356 - (21%)

  Fly    29 NGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQT 93
            ||..|.:||.|.|          :.|..|:|:|||||:|:...|||:|.|:|||....|..||.|
  Rat     4 NGSPGTSGSANDS----------QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTT 58

  Fly    94 GRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPK---------KAKARHGKIFVGGLTTEISD 149
            .|||||.|:.|.:..::|||.....|.::||.:|||         |...|..|||||||:.....
  Rat    59 KRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVV 123

  Fly   150 EEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK 214
            |::|.||.|||.:.:..:.|||..::.:||.|:||::|.||..:.:....:|..|.|:.|:|.||
  Rat   124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPK 188

  Fly   215 PENQMMGGMRGGPRG----------GMRGGRGGYGGRGGYNN--QWDGQGSYGGYGGGYG----- 262
             |.....|.||..||          ||        |..||.|  ...|:| |.|:...||
  Rat   189 -EVMFPPGTRGRARGLPYTMDAFMLGM--------GMLGYPNFVATYGRG-YPGFAPSYGYQFPA 243

  Fly   263 -------GYGAGGYGDYYA-------GGYYNGY----DYGYDGYGYG------GGFEGNGYGGG- 302
                   .:.|..||...|       |...|.|    ::|......|      |||.|....|.
  Rat   244 LLPYLNASFPAAAYGPVAAAAVAAARGSVLNSYSAQPNFGAPTSPAGSNPARPGGFPGANSPGPV 308

  Fly   303 ----GGGNMGGGRGGPRGGGGPKGGGGFNGG 329
                |..:...|.|.......|:.|.||..|
  Rat   309 ADLYGPASQDSGVGNYISAASPQPGSGFGHG 339

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	33/70 (47%)
		RRM2_hnRNPD_like	137..211	CDD:240775	29/73 (40%)
Msi2	XP_038943587.1	RRM1_MSI2	17..109	CDD:410153	38/91 (42%)
		PABP-1234	<35..351	CDD:130689	102/315 (32%)
		RRM2_MSI	111..184	CDD:240769	28/72 (39%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910