DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment sqd and Caper

DIOPT Version :9

Sequence 1:	NP_731825.1	Gene:	sqd / 41666	FlyBaseID:	FBgn0263396	Length:	344	Species:	Drosophila melanogaster
Sequence 2:	NP_609095.1	Gene:	Caper / 33989	FlyBaseID:	FBgn0031883	Length:	594	Species:	Drosophila melanogaster

Alignment Length:	188	Identity:	41/188 - (21%)
Similarity:	81/188 - (43%)	Gaps:	25/188 - (13%)

- Green bases have known domain annotations that are detailed below.

  Fly    49 SGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEA---- 109
            |.:..|.|.:|...||.....::|.:.|...|::..:.:.|..:|.|.:|.|:|.|.:.|:
  Fly   230 SPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALA 294

  Fly   110 --------------IDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFG 160
                          :....|....:.|:......|:.....:::||.|...|:::.::..|..||
  Fly   295 LGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFG 359

  Fly   161 NIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQ----KIAGKEVDVKRATPK 214
            .|..:::..|.:..:.||:.|||:.:   ..|..|..:|    ::||:.:.|...|.:
  Fly   360 KIDAIQLIMDTETGRSKGYGFITYHN---ADDAKKALEQLNGFELAGRLMKVGNVTER 414

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	16/88 (18%)
sqd	NP_731825.1	RRM2_hnRNPD_like	137..211	CDD:240775	20/77 (26%)
Caper	NP_609095.1	RRM1_RBM39_like	238..310	CDD:240729	14/71 (20%)
		RRM2_RBM23_RBM39	337..409	CDD:240730	19/74 (26%)
		RBM39linker	425..500	CDD:292157
		RRM3_RBM39_like	483..567	CDD:240731
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45463942
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840