DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sqd and Hrb27C

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_476869.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster


Alignment Length:370 Identity:110/370 - (29%)
Similarity:159/370 - (42%) Gaps:93/370 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 QRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
            :.|:..||||||||||||::.|..:|.::|:|....|..:.::||||||.|:.|.:...::.|..
  Fly     2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ 66

  Fly   116 ADEHIINSKKVDPK--------KAKARHG-KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDK 171
            ...|.::.:.:|||        |.|...| |:|:|||.:.:::.:::|:|.::|.:.||.:.:|:
  Fly    67 NGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQ 131

  Fly   172 QKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK---------------------- 214
            :|.:.:||.|::|:.|..|..:.......:.||:|::|:|.|:                      
  Fly   132 EKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQNSNNSTVGGAYGKLGN 196

  Fly   215 ----------PENQMMG--GMRGGPRGGMRGG----RGGYGGRG--------GYNNQWDGQGSYG 255
                      |.|.|.|  |..|||...|..|    ..||.|.|        ||.|  .|.|||.
  Fly   197 ECSHWGPHHAPINMMQGQNGQMGGPPLNMPIGAPNMMPGYQGWGTSPQQQQYGYGN--SGPGSYQ 259

  Fly   256 GYGGGYGGYGAGGYGDYYAGGY----YNGYDYGYDGYGYGGGFEGNGYGGGGGG---------NM 307
            |:|...|..|.......|||..    |.|||.      |.....|...|..|||         |.
  Fly   260 GWGAPPGPQGPPPQWSNYAGPQQTQGYGGYDM------YNSTSTGAPSGPSGGGSWNSWNMPPNS 318

  Fly   308 GGGRGGPRGG----------------GGPKGGGGFNGGKQRGGGG 336
            .|..|.|..|                |||...|.. ||..|.|.|
  Fly   319 AGPTGAPGAGAGTATDMYSRAQAWATGGPSTTGPV-GGMPRTGPG 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 27/70 (39%)
RRM2_hnRNPD_like 137..211 CDD:240775 22/73 (30%)
Hrb27CNP_476869.1 RRM1_hnRNPA_hnRNPD_like 9..80 CDD:409763 27/70 (39%)
RRM2_DAZAP1 94..173 CDD:409765 24/78 (31%)

Return to query results.
Submit another query.