Protein Alignment sqd and rbm7

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_956219.1
• Gene: rbm7 / 334784
• ZFINID: ZDB-GENE-030131-6724
• Length: 252
• Species: Danio rerio
• Alignment Length: 274
• Identity: 57/274 - (20%)
• Similarity: 90/274 - (32%)
• Gaps: 92/274 - (33%)

  Fly    55 DRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAID-------- 111
            ||.||||.|..:.||:.:.:.|.:.|.:..:.:..:.: |:|:.|||:.|.:..::.
Zfish     8 DRTLFVGNLDPQVTEEVIFELFLQAGPLIKVKIPKNNE-GKSKLFAFVNFKHEVSVPYALNLLNG 71

  Fly   112 ----------KVSAADEHI-------INSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQF 159
                      |......||       .||:...|.......     ||.|.|           |.
Zfish    72 IRLHGRQLNIKFKTGSSHINQEGKSPANSQNPSPANTPGHR-----GGRTPE-----------QM 120

  Fly   160 GN-----IVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQM 219
            |:     ...::.||....         |...:.::.::.:...|::                ||
Zfish   121 GSPSYSPPQHMQRPFSSPD---------TLQRQAMMNNMWQVQMQQL----------------QM 160

  Fly   220 MGGM--------RGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGA----GGYGDY 272
            :.|.        ||...||..|.||........||.   ||....:|.|...|..    |..||:
Zfish   161 LSGTFQQGMQQPRGNADGGWSGHRGQRHSPQDNNNH---QGRDQRHGNGANNYERNRRDGQRGDF 222

  Fly   273 Y-----AGGYYNGY 281
            |     :||:...|
Zfish   223 YHHDDRSGGHNRNY 236

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	20/95 (21%)
		RRM2_hnRNPD_like	137..211	CDD:240775	10/78 (13%)
rbm7	NP_956219.1	RRM_RBM7	8..82	CDD:410005	17/74 (23%)
		PABP-1234	<11..195	CDD:130689	41/225 (18%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	88..137		13/64 (20%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	171..252		21/69 (30%)
		PRK12678	<171..>248	CDD:237171	21/69 (30%)