Protein Alignment sqd and hnrnpa0b

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_999871.1
• Gene: hnrnpa0b / 334222
• ZFINID: ZDB-GENE-030131-6154
• Length: 314
• Species: Danio rerio
• Alignment Length: 317
• Identity: 130/317 - (41%)
• Similarity: 167/317 - (52%)
• Gaps: 50/317 - (15%)

  Fly    57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHII 121
            |||||||:.:||...||.:|.::|.:....|..:.|..|||.|.|:.::.:|..|...||..|::
Zfish     9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAARPHVV 73

  Fly   122 NSKKVDPKKAKARHG-----------KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQ 175
            :.|.|:.|:|.||..           |||||||..:|.::::..:|.|||.|.:.|:..||...:
Zfish    74 DGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGK 138

  Fly   176 RKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGG-PRGGMRG-GR--- 235
            ::||.|:.|:........:......|.|.:|:||:|..|.|.|..||.||| .|||.|| ||
Zfish   139 KRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKALTKQEIQAAGGARGGRGRGGGRGMGRNQN 203

  Fly   236 GGYGGRGGYNNQWDGQGSY-GGYGGGYGG--------YGAGGYGDYYAGGYYNGY-----DYG-- 284
            |..|||||      |.|.| |||||||||        ||:||||..|.|||..||     .||
Zfish   204 GFGGGRGG------GYGGYGGGYGGGYGGNDGGYGGSYGSGGYGGGYGGGYGGGYGEQMGGYGGG 262

  Fly   285 --YDGYGYGGGFEGNGYGGGGGGNMGGGRGG---PRGGGGPKGGGGFNGGKQRGGGG 336
              |..:|.|.|.:.:|||...|||..|||.|   ||||||..|.|       |||.|
Zfish   263 NDYSDFGSGYGQQSSGYGPMKGGNTYGGRSGAPYPRGGGGGPGYG-------RGGYG 312

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	26/70 (37%)
		RRM2_hnRNPD_like	137..211	CDD:240775	25/73 (34%)
hnrnpa0b	NP_999871.1	RRM_SF	6..84	CDD:473069	28/74 (38%)
		RRM_SF	100..179	CDD:473069	27/78 (35%)
		HnRNPA1	263..294	CDD:463312	13/30 (43%)