Protein Alignment sqd and hnrnpa0l

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_001268650.1
• Gene: hnrnpa0l / 321899
• ZFINID: ZDB-GENE-030131-618
• Length: 302
• Species: Danio rerio
• Alignment Length: 303
• Identity: 126/303 - (41%)
• Similarity: 162/303 - (53%)
• Gaps: 32/303 - (10%)

  Fly    57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHII 121
            |||||||:.:||::.||.||.:||::....|..:....|||.|.|:.:::||..|...:|..||:
Zfish     7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSARPHIV 71

  Fly   122 NSKKVDPKKAKARHG-----------KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQ 175
            :...||.|:|.||..           |||||||..:|.||.::.||.|||.|.:.::..||...:
Zfish    72 DGNNVDLKRAVAREDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGK 136

  Fly   176 RKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRG---G 237
            ::||.|:.||........:......|.|.:|:||:|..|.|.|..||.||| |||...|||   |
Zfish   137 KRGFGFVYFDDNDSADKAVVMKFHSICGHKVEVKKALTKQEMQSTGGGRGG-RGGRGMGRGSGFG 200

  Fly   238 YGGRGGYNNQWDGQGSYGGYGGGY---GGYGAGGYGDYYAGGYYNGYDYGYDGYGYGGGFEGNGY 299
            .||||||.|.:..|.:..|...||   .||| |||.|...|||.||  .||..:|.|.|.:.:||
Zfish   201 GGGRGGYYNDYGYQNNGFGNNSGYDSQNGYG-GGYSDQMGGGYGNG--NGYSDFGEGYGQQASGY 262

  Fly   300 GG--GGGGNMGGGRGG----PRGGGGPKGGGGFNGGKQRGGGG 336
            |.  .|.||...||..    |||     ||||.:||..|||.|
Zfish   263 GAMKTGYGNYSSGRQSSGPYPRG-----GGGGGSGGYGRGGYG 300

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	28/70 (40%)
		RRM2_hnRNPD_like	137..211	CDD:240775	28/73 (38%)
hnrnpa0l	NP_001268650.1	RRM1_hnRNPA0	4..82	CDD:409764	30/74 (41%)
		RRM_SF	98..177	CDD:473069	30/78 (38%)