DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and hnrnpaba

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_997752.2 Gene:hnrnpaba / 321466 ZFINID:ZDB-GENE-030131-185 Length:340 Species:Danio rerio


Alignment Length:380 Identity:149/380 - (39%)
Similarity:204/380 - (53%) Gaps:80/380 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AENKQVDTEINGEDFTKDVTADGPGSE-NGD--AGAAGS--TNGSSDNQSAASGQRD------DD 55
            ||.:.::|.:||.:...|:...|...: |||  |||.|:  .:|::.:..|..||.|      |.
Zfish     4 AEQQYMETSLNGHEGEDDLNGAGQYDQGNGDAQAGAQGNAGADGTAGDDGADGGQIDASKGEEDA 68

  Fly    56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHI 120
            .|:|||||||:|::|:|:|:|.|:||:....:|.||.|||||||.||:|.....:|||.|..||.
Zfish    69 GKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQKEHR 133

  Fly   121 INSKKVDPKKAKARH----GKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCF 181
            ::.:::|||||.|..    .|||||||..|.::|.|:.|||.||.|..:|:|.|.:.::|:||.|
Zfish   134 LDGRQIDPKKAMAMKKEPVKKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVF 198

  Fly   182 ITFDSEQVVTDLLKTPKQKI------AGKE--VDVKRATPKP--ENQMMGGMRGGPRGGMRGGRG 236
            |||..|:.|..:|:.....:      :|||  .::|.|.||.  :.|..||..||      ||||
Zfish   199 ITFKEEEAVKKILEKKYHNVSGTKDTSGKEGLCEIKIAQPKEVYQQQQYGGRFGG------GGRG 257

  Fly   237 -GYGGRG-----GYNNQWD---GQGSYGGYGG--GYGGYGAGGYGDY-YAGGYYNGYDYGYDGYG 289
             |.||:|     ||||.|:   |...||||||  |||||  ||||:| |:||||.||        
Zfish   258 RGRGGQGQNWNQGYNNYWNQGYGNQGYGGYGGQQGYGGY--GGYGNYDYSGGYYGGY-------- 312

  Fly   290 YGGGFEGNGYGGGGGGNMGGGRGGPRGGGGPKGGGGFNGGKQRGGGGRQQRHQPY 344
              ||::.|                         .|..:.||....|..|..::||
Zfish   313 --GGYDYN-------------------------QGNTSYGKTPRRGAHQSSYKPY 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 35/70 (50%)
RRM2_hnRNPD_like 137..211 CDD:240775 33/81 (41%)
hnrnpabaNP_997752.2 CBFNT 1..69 CDD:311868 20/64 (31%)
RRM1_hnRNPAB 65..144 CDD:410151 39/78 (50%)
RRM2_hnRNPAB 149..228 CDD:409997 30/78 (38%)

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