DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and hnrnpaba

DIOPT Version :9

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_997752.2 Gene:hnrnpaba / 321466 ZFINID:ZDB-GENE-030131-185 Length:340 Species:Danio rerio


Alignment Length:380 Identity:149/380 - (39%)
Similarity:204/380 - (53%) Gaps:80/380 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AENKQVDTEINGEDFTKDVTADGPGSE-NGD--AGAAGS--TNGSSDNQSAASGQRD------DD 55
            ||.:.::|.:||.:...|:...|...: |||  |||.|:  .:|::.:..|..||.|      |.
Zfish     4 AEQQYMETSLNGHEGEDDLNGAGQYDQGNGDAQAGAQGNAGADGTAGDDGADGGQIDASKGEEDA 68

  Fly    56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHI 120
            .|:|||||||:|::|:|:|:|.|:||:....:|.||.|||||||.||:|.....:|||.|..||.
Zfish    69 GKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQKEHR 133

  Fly   121 INSKKVDPKKAKARH----GKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCF 181
            ::.:::|||||.|..    .|||||||..|.::|.|:.|||.||.|..:|:|.|.:.::|:||.|
Zfish   134 LDGRQIDPKKAMAMKKEPVKKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVF 198

  Fly   182 ITFDSEQVVTDLLKTPKQKI------AGKE--VDVKRATPKP--ENQMMGGMRGGPRGGMRGGRG 236
            |||..|:.|..:|:.....:      :|||  .::|.|.||.  :.|..||..||      ||||
Zfish   199 ITFKEEEAVKKILEKKYHNVSGTKDTSGKEGLCEIKIAQPKEVYQQQQYGGRFGG------GGRG 257

  Fly   237 -GYGGRG-----GYNNQWD---GQGSYGGYGG--GYGGYGAGGYGDY-YAGGYYNGYDYGYDGYG 289
             |.||:|     ||||.|:   |...||||||  |||||  ||||:| |:||||.||        
Zfish   258 RGRGGQGQNWNQGYNNYWNQGYGNQGYGGYGGQQGYGGY--GGYGNYDYSGGYYGGY-------- 312

  Fly   290 YGGGFEGNGYGGGGGGNMGGGRGGPRGGGGPKGGGGFNGGKQRGGGGRQQRHQPY 344
              ||::.|                         .|..:.||....|..|..::||
Zfish   313 --GGYDYN-------------------------QGNTSYGKTPRRGAHQSSYKPY 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM_SF 58..129 CDD:302621 35/70 (50%)
RRM2_hnRNPD_like 137..211 CDD:240775 33/81 (41%)
hnrnpabaNP_997752.2 CBFNT 1..69 CDD:285369 20/64 (31%)
RRM1_hnRNPAB 70..144 CDD:241201 38/73 (52%)
RRM2_hnRNPAB 149..228 CDD:241028 30/78 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 84 1.000 Domainoid score I8173
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 237 1.000 Inparanoid score I3348
OMA 1 1.010 - - QHG45859
OrthoDB 1 1.010 - - D496221at33208
OrthoFinder 1 1.000 - - FOG0001417
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR48033
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4769
SonicParanoid 1 1.000 - - X985
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1111.070

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