DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and Cstf2t

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_001101056.1 Gene:Cstf2t / 309338 RGDID:1310026 Length:629 Species:Rattus norvegicus


Alignment Length:227 Identity:50/227 - (22%)
Similarity:90/227 - (39%) Gaps:56/227 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHI 120
            |.:|||.:.:|.||::|:|.|.:.|.:.|..:..|.:||:.:|:.|..:.:.|.  .:||...  
  Rat    16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQET--ALSAMRN-- 76

  Fly   121 INSKKVDPKKAKARHGKIFVGGLTTEISDEEIKT-------YFGQFGNIVEVE------------ 166
            :|.::...:..:       |....:|.:.||:|:       ....:|:.::.|            
  Rat    77 LNGREFSGRALR-------VDNAASEKNKEELKSLGPAAPIIDSPYGDPIDPEDAPESITRAVAS 134

  Fly   167 MPFDKQKSQRKGFCFITFDSEQVVTD-LLKTPK--------------------QKIAGKEVDVKR 210
            :|.::.....|.......:|.|...: ||:.|:                    .||..:::.|..
  Rat   135 LPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHVTP 199

  Fly   211 ATPKPENQMMGGMRGGPRGGMRGGRGGYGGRG 242
            ..|.....:.|...|||     ||.||.||.|
  Rat   200 LIPGKSQPVSGPGPGGP-----GGPGGPGGPG 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 20/70 (29%)
RRM2_hnRNPD_like 137..211 CDD:240775 17/113 (15%)
Cstf2tNP_001101056.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 22/88 (25%)
CSTF2_hinge 112..191 CDD:433869 10/78 (13%)
CSTF_C 585..625 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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