DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and Hnrnpdl

DIOPT Version :9

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:XP_006250724.1 Gene:Hnrnpdl / 305178 RGDID:1309950 Length:419 Species:Rattus norvegicus


Alignment Length:344 Identity:132/344 - (38%)
Similarity:182/344 - (52%) Gaps:59/344 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 ADGPGS-------ENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKY 79
            |||..:       .|.:..|.||...:|.||       .||.|:|:|||||:|::|:|.::..::
  Rat   114 ADGSATMEDMNEYSNIEEFAEGSKINASKNQ-------QDDGKMFIGGLSWDTSKKDLTEYLSRF 171

  Fly    80 GEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHG-----KIF 139
            ||:....:||||.|||||||.|::|.:..::|||....||.::.|.:|||:|||..|     |:|
  Rat   172 GEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVF 236

  Fly   140 VGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGK 204
            ||||:.:.|:|:||.|||.||.|..:|:|.|.:.::|:||||||:..|:.|..||::...:|...
  Rat   237 VGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSG 301

  Fly   205 EVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRG---------GYNNQWDGQGSYGGYGGG 260
            :.::|.|.||...:.....:.|.||...|||||..|||         |:||.:| || ||.|...
  Rat   302 KCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNNYYD-QG-YGNYNSA 364

  Fly   261 YGGYGAGGYGDYYAGGYYNGYDYGYDGYGYGGGFEGNGYGGGGGGNMGGGRGGPRGGGGPKGGGG 325
            ||.....|||.|    .|.||:||  .||||.|:  ..|                     .|...
  Rat   365 YGDESYSGYGGY----DYTGYNYG--SYGYGQGY--TDY---------------------SGQQS 400

  Fly   326 FNGGKQRGGGGRQQRHQPY 344
            ..|...||||..|..:|||
  Rat   401 TYGKASRGGGNHQNNYQPY 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM_SF 58..129 CDD:302621 31/70 (44%)
RRM2_hnRNPD_like 137..211 CDD:240775 32/73 (44%)
HnrnpdlXP_006250724.1 RRM1_hnRPDL 149..224 CDD:410152 34/74 (46%)
RRM2_hnRPDL 234..308 CDD:409998 32/73 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 84 1.000 Domainoid score I8052
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 222 1.000 Inparanoid score I3446
OMA 1 1.010 - - QHG45859
OrthoDB 1 1.010 - - D496221at33208
OrthoFinder 1 1.000 - - FOG0001417
OrthoInspector 1 1.000 - - otm46028
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48033
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X985
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1212.040

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