DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and Tardbp

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_001386034.1 Gene:Tardbp / 298648 RGDID:1310906 Length:414 Species:Rattus norvegicus


Alignment Length:432 Identity:119/432 - (27%)
Similarity:169/432 - (39%) Gaps:137/432 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 QVDTEINGEDFTKDVTADGPGS-----------------------ENGDAGAAG---STNGSSDN 44
            ::.:|.:|......|||..||:                       ...|||...   ..|...||
  Rat    17 EIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDN 81

  Fly    45 Q------SAASG-------QRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRS 96
            :      .|:|.       |:..|  |.|.||.|:|||::|:|:|..:||:..:.||.|.:||.|
  Rat    82 KRKMDEADASSAVKVKRAVQKTSD--LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHS 144

  Fly    97 RGFAFIVFTNTEAIDKVSAADEHII----------NSKKVDPKKAKARHGKIFVGGLTTEISDEE 151
            :||.|:.||..|...|| .:..|:|          |||:...:..::|  |:|||..|.:::.||
  Rat   145 KGFGFVRFTEYETQVKV-MSQRHMIDGRWCDCKLPNSKQSPDEPLRSR--KVFVGRCTEDMTAEE 206

  Fly   152 IKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVV-----TDLLKTPKQKIAGKEVDVKRA 211
            ::.:|.|:|.:|:|.:|     ...:.|.|:||..::|.     .||:      |.|..|.:..|
  Rat   207 LQQFFCQYGEVVDVFIP-----KPFRAFAFVTFADDKVAQSLCGEDLI------IKGISVHISNA 260

  Fly   212 TPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGAGGYGDYYAGG 276
            .||..:.         |...|.||.| |..||:.||       ||:|...|| || |.|:...|.
  Rat   261 EPKHNSN---------RQLERSGRFG-GNPGGFGNQ-------GGFGNSRGG-GA-GLGNNQGGN 306

  Fly   277 YYNGYDYG----------------YDGYGYGG---------GFEGN-------------GYGGGG 303
            ...|.::|                ...:|..|         |..||             .:|.|.
  Rat   307 MGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQSQGSMQREPNQAFGSGN 371

  Fly   304 GGNMGGGRGGPRGGGGPK---GGGGFNGG-------KQRGGG 335
            ....|...|.|.|.|...   .|.|||||       |..|.|
  Rat   372 NSYSGSNSGAPLGWGSASNAGSGSGFNGGFGSSMDSKSSGWG 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 32/80 (40%)
RRM2_hnRNPD_like 137..211 CDD:240775 23/78 (29%)
TardbpNP_001386034.1 TDP43_N 4..77 CDD:465833 10/59 (17%)
RRM1_TDP43 105..178 CDD:409760 30/75 (40%)
RRM2_TDP43 191..261 CDD:409761 24/82 (29%)

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