DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and msi2

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_595094.1 Gene:msi2 / 2541150 PomBaseID:SPBC660.15 Length:474 Species:Schizosaccharomyces pombe


Alignment Length:381 Identity:111/381 - (29%)
Similarity:160/381 - (41%) Gaps:93/381 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 EINGE---DFTKDVTADGPGSENGDAG-------AAGSTNGSSDNQSAASGQRDDDRKLFVGGLS 64
            :|.|:   ..|.|...||..|:|.:..       .:|:...:.||....|....:|.|:|:|||:
pombe   107 DIRGQALSSATWDNAEDGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLN 171

  Fly    65 WETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPK 129
            ||||:..|||:|.::||:....|..|..|||||||.|:.|.|.:.:::| .:.||.::.|.:|||
pombe   172 WETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV-MSKEHHLDGKIIDPK 235

  Fly   130 KAKARH-----GKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQV 189
            :|..|.     .|:||||:..:.::||.:.:|.|||.:::..:..||...:.:||.|:|:::|..
pombe   236 RAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESA 300

  Fly   190 VTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSY 254
            |...:..|...|.||.|:|||||||      ..:|....   |...|.:|....|         |
pombe   301 VEATMSQPYITIHGKPVEVKRATPK------ASLRDSHD---RHQHGYHGNANPY---------Y 347

  Fly   255 GGYGGGYGGYGAGGYGDYY---------------------------------------AGGYYNG 280
            ......|||........||                                       .|..|  
pombe   348 AQNMNMYGGMTPAMMAQYYRQMQQYMEAMRNMPAAAGAVPYPQPVMPAGMADWQQQQQQGAAY-- 410

  Fly   281 YDYGYDGYGYGGGF-------EGNGYGGGGGGNMGG-----------GRGGPRGGG 318
            :|......|.|.|.       .|:..||..|.|.||           ||||..|||
pombe   411 FDPSKMNQGTGDGVPFSPSMPSGSSRGGYHGRNPGGPNRQRYRGRRDGRGGNTGGG 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 31/70 (44%)
RRM2_hnRNPD_like 137..211 CDD:240775 26/73 (36%)
msi2NP_595094.1 2A1904 <18..>199 CDD:273344 30/91 (33%)
RRM1_Hrp1p 165..240 CDD:409991 34/75 (45%)
RRM2_Hrp1p 248..325 CDD:409767 29/76 (38%)

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