DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sqd and Tra2b

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_033212.1 Gene:Tra2b / 20462 MGIID:106016 Length:288 Species:Mus musculus


Alignment Length:331 Identity:73/331 - (22%)
Similarity:121/331 - (36%) Gaps:89/331 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 ENGDAGAAGSTNG---SSDNQSAASGQRDDDR----KLFVGGLSWETTEKELRDHFGKYGEIESI 85
            |:..|..:||.:|   |:.:..|.|..::|.|    |......|...:.:..|.|:.:     |.
Mouse    13 ESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTR-----SR 72

  Fly    86 NVKTDPQTGRSRGFA-FIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISD 149
            :.....:..|||.:: .....::.:...:|....|:.|....||...      :.|.||:...::
Mouse    73 SRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCC------LGVFGLSLYTTE 131

  Fly   150 EEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKR---- 210
            .:::..|.::|.|.:|.:.:|:|..:.:||.|:.|::    .|..|..|::..|.|:|.:|    
Mouse   132 RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN----VDDAKEAKERANGMELDGRRIRVD 192

  Fly   211 --ATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGAGGYGDYY 273
              .|.:|.....|...|.|.                                   ||:....|||
Mouse   193 FSITKRPHTPTPGIYMGRPT-----------------------------------YGSSRRRDYY 222

  Fly   274 AGGYYNGYDYGYDGYGYGGGFEGNGYGGGGGGNMGGGRGGPRGGGGPKGGGGFNGGKQRGGGGRQ 338
            .    .|||.|||...|    ....|.||||                 ||||:...:.|....|:
Mouse   223 D----RGYDRGYDDRDY----YSRSYRGGGG-----------------GGGGWRAAQDRDQIYRR 262

  Fly   339 QRHQPY 344
            :...||
Mouse   263 RSPSPY 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 11/71 (15%)
RRM2_hnRNPD_like 137..211 CDD:240775 20/79 (25%)
Tra2bNP_033212.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..114 21/105 (20%)
RRM_TRA2 117..196 CDD:409798 20/88 (23%)
Linker 193..230 13/75 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 196..225 10/67 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 242..288 12/44 (27%)

Return to query results.
Submit another query.