Protein Alignment sqd and sqd-1

DIOPT Version :9

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_001380080.1
• Gene: sqd-1 / 177392
• WormBaseID: WBGene00022235
• Length: 308
• Species: Caenorhabditis elegans
• Alignment Length: 302
• Identity: 118/302 - (39%)
• Similarity: 157/302 - (51%)
• Gaps: 36/302 - (11%)

  Fly    29 NGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQT 93
            ||:|......||.|.       :.::|:|:||||:|.|...::|..||.:|||:....||.|...
 Worm     9 NGNASETIKENGHST-------KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTN 66

  Fly    94 GRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHG-KIFVGGLTTEISDEEIKTYFG 157
            ||||||||:.||..|......||.|..|..|.|:.|.||:|.. |:|||||.::.|:::::::|.
 Worm    67 GRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFE 131

  Fly   158 QFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGG 222
            |||.:.::|.|||||...|:.|.||.|:.|:.........||....:|.|||:|.|:      |.
 Worm   132 QFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKAVPQ------GK 190

  Fly   223 MRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGG-GYGGYGAGG--YGDYYAGGYY------ 278
            ...|.:|.|.||||.||||||.||    .|.|.|:|. |...|||.|  :||:|..|||
 Worm   191 RFPGAQGRMPGGRGMYGGRGGNNN----SGWYAGWGQIGAMPYGATGAAWGDWYGNGYYGQQGAA 251

  Fly   279 --------NGYDYGYDGY-GYGGGFEGNGYGGGGGGNMGGGR 311
                    .||..||..: |...||:.....|...||.|..|
 Worm   252 HHNNSGSSQGYGSGYQSFAGNNSGFDYQQAQGARQGNNGQPR 293

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	32/70 (46%)
		RRM2_hnRNPD_like	137..211	CDD:240775	29/73 (40%)
sqd-1	NP_001380080.1	RRM2_NsCP33_like	30..104	CDD:410187	34/73 (47%)
		RRM_SF	111..185	CDD:418427	29/73 (40%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	60	1.000	Domainoid score	I7046
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	191	1.000	Inparanoid score	I2561
Isobase	0	0.000	Not matched by this tool.
OMA	1	1.010	-	-		QHG45859
OrthoDB	1	1.010	-	-		D1055256at2759
OrthoFinder	1	1.000	-	-		FOG0001417
OrthoInspector	1	1.000	-	-		oto17480
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R4769
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	8	8.010