Protein Alignment sqd and hrpa-1

DIOPT Version :9

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_001040945.1
• Gene: hrpa-1 / 177101
• WormBaseID: WBGene00001999
• Length: 347
• Species: Caenorhabditis elegans
• Alignment Length: 343
• Identity: 129/343 - (37%)
• Similarity: 175/343 - (51%)
• Gaps: 52/343 - (15%)

  Fly    39 NGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIV 103
            |||.|    ||.:.::.||:|||||:..||:..:|:.:.::|||..|.|..||.|.|||||.|:.
 Worm    10 NGSGD----ASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVT 70

  Fly   104 FTNTEAIDKVSAADEHIINSKKVDPKKAKARHGK-----------IFVGGLTTEISDEEIKTYFG 157
            |:....:|.......|||:.|.||||:|..|..|           ::|.|:..:.:::.:..||.
 Worm    71 FSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFT 135

  Fly   158 QFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPE------ 216
            ::|.:.:.|:..||...:.:||.|:|||....|...:......:.|...||::...|.|
 Worm   136 KYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQM 200

  Fly   217 ---NQMMGG-MRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGG-YGGGYGGYGAGGYGDYYAGG 276
               .:..|| .|.|.|||..||.||.||.|| ..|..|.|:||| .|||.||||.|.||    ||
 Worm   201 NRDRETRGGRSRDGQRGGYNGGGGGGGGWGG-PAQRGGPGAYGGPGGGGQGGYGGGNYG----GG 260

  Fly   277 YYNGYDYGYDGYGYGGGFEG--NGYGGGGGGNMGGGR----GGPR-----GGGGPK---GGGGFN 327
                  :|..|.|..||:.|  ...||||.|..|||.    |||:     |.|||:   ||||:.
 Worm   261 ------WGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGWG 319

  Fly   328 G-GKQRGGGGRQQRHQPY 344
            | |:|:||.|.|...|.:
 Worm   320 GQGQQQGGWGGQSGAQQW 337

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	30/70 (43%)
		RRM2_hnRNPD_like	137..211	CDD:240775	19/84 (23%)
hrpa-1	NP_001040945.1	RRM1_hnRNPA_like	24..101	CDD:241022	34/76 (45%)
		RRM2_hnRNPA_like	115..187	CDD:240774	17/71 (24%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910