Protein Alignment sqd and rsp-8

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_001255142.1
• Gene: rsp-8 / 176613
• WormBaseID: WBGene00004705
• Length: 309
• Species: Caenorhabditis elegans
• Alignment Length: 350
• Identity: 108/350 - (30%)
• Similarity: 135/350 - (38%)
• Gaps: 118/350 - (33%)

  Fly    25 PGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKT 89
            |.:..|..|..|...|...||..........:.|.|..||..||||:|||.||::|||...::..
 Worm    45 PRARYGGGGGGGGGGGRGRNQQYDRENPQPSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVY 109

  Fly    90 DPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKT 154
            |..:|.||||.||.|   ..|:..:||.:.:.|                      |::...:|:.
 Worm   110 DRPSGNSRGFGFIYF---NLIEDATAARDKLCN----------------------TDLDGHKIRV 149

  Fly   155 YFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQM 219
            .|..                                                 .||.......|.
 Worm   150 DFSL-------------------------------------------------TKRGHSPTPGQY 165

  Fly   220 MGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGG--YGGGYGGYGAGGYGDYYAGGYYNGYD 282
            ||..||   ||..|| |.:||.||  ::::.:||.||  |||...|.|.||.||.|.||  .|..
 Worm   166 MGDRRG---GGSSGG-GRFGGGGG--DRFNDRGSRGGDRYGGDRRGGGGGGGGDRYGGG--GGDR 222

  Fly   283 YGYDGYGYGGGFEGN-----GY--GGGGGGNM--GGGRGGP---------RGGGGPKGGG----- 324
            ||.|.||.|||..|:     |:  ||||||.|  |||.|||         |.||   |||
 Worm   223 YGGDRYGGGGGRRGSPDRRGGFRSGGGGGGYMRSGGGGGGPDRRDHRDNDRNGG---GGGHRPYD 284

  Fly   325 --------GFNGGKQRGGGGRQQRH 341
                    .:..|...|||||:.|:
 Worm   285 PSFRRRVESYGSGNSGGGGGRRDRY 309

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	29/70 (41%)
		RRM2_hnRNPD_like	137..211	CDD:240775	4/73 (5%)
rsp-8	NP_001255142.1	RRM_TRA2	75..154	CDD:409798	32/152 (21%)