Sequence 1: | NP_731825.1 | Gene: | sqd / 41666 | FlyBaseID: | FBgn0263396 | Length: | 344 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001254189.1 | Gene: | tdp-1 / 174436 | WormBaseID: | WBGene00006514 | Length: | 414 | Species: | Caenorhabditis elegans |
Alignment Length: | 252 | Identity: | 58/252 - (23%) |
---|---|---|---|
Similarity: | 106/252 - (42%) | Gaps: | 47/252 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 21 TADGPGSENGDAGAAGSTNGSSDNQSAASG-----QRDDDR-KLFVGGLSWETTEKELRDHFGKY 79
Fly 80 GEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARH--------- 135
Fly 136 -GKIFVGGLTTEISDEEIKTYFG-QFGNIVE--------VEMPFDKQKSQRKGFCFITFDSEQVV 190
Fly 191 TDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQ 247 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
sqd | NP_731825.1 | RRM_SF | 58..129 | CDD:302621 | 19/70 (27%) |
RRM2_hnRNPD_like | 137..211 | CDD:240775 | 18/82 (22%) | ||
tdp-1 | NP_001254189.1 | RRM_SF | 174..247 | CDD:302621 | 20/73 (27%) |
RRM_SF | 262..339 | CDD:302621 | 18/83 (22%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |