DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and Hrb27C

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:XP_321133.5 Gene:Hrb27C / 1281194 VectorBaseID:AGAMI1_011503 Length:412 Species:Anopheles gambiae


Alignment Length:358 Identity:113/358 - (31%)
Similarity:162/358 - (45%) Gaps:81/358 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 DDR---KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
            ||.   |||||||||||:.:.|:.:|.:|||:....|..:.:|||||||.|:.|.:.|.:::...
Mosquito    13 DDHEKGKLFVGGLSWETSHENLQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPENVERALE 77

  Fly   116 ADEHIINSKKVDPKKAKAR----------HGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFD 170
            ...|.::.:.:|||....|          :.|:|:|||...|::.:::::|.::|.::||.:.:|
Mosquito    78 NGPHTLDGRTIDPKPCNPRSQHKPKRTGGYPKVFLGGLPPNITETDLRSFFCRYGTVMEVVIMYD 142

  Fly   171 KQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQ----------------- 218
            ::|.:.:||.|::|::|..|..........|:||:|:||:|.|:..||                 
Mosquito   143 QEKKKSRGFGFLSFENESAVERATTDHFVHISGKQVEVKKAEPRDGNQNNSNSMNTDSYQWGSPQ 207

  Fly   219 ---MMGGMRGGPRGGMRGGR-GGYGGRGGYNNQWDGQGSYGGYGGGYGGYGAGGYGDYYA----- 274
               |..|..|||...|:... .||.|.|....|   || |||||.|..| .|..|..:.|     
Mosquito   208 APPMGNGQMGGPPINMQSNMIQGYQGWGTSQPQ---QG-YGGYGAGAAG-AANAYQSWGAPPPPQ 267

  Fly   275 -GGYYN-------GYDYGYDGYGYGGGFEGNGYGGG---------------------------GG 304
             .|.||       ||. |||.|...|.....|||.|                           .|
Mosquito   268 QWGNYNATPQQTQGYG-GYDMYNNSGAGSAGGYGSGNWNSWNMPPNTAGSAAGSTADMYTRPQSG 331

  Fly   305 GNMG-GGRGGPRGGGGPKGGGGFNGGKQRGGGG 336
            ...| |...||..||..|.|..:.||....|||
Mosquito   332 PTAGPGASAGPTSGGPSKPGSEYGGGSAAYGGG 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 28/70 (40%)
RRM2_hnRNPD_like 137..211 CDD:240775 24/73 (33%)
Hrb27CXP_321133.5 RRM1_hnRNPA_hnRNPD_like 20..91 CDD:409763 28/70 (40%)
RRM_SF 106..185 CDD:473069 25/78 (32%)

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