Protein Alignment sqd and LOC1271847

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: XP_310701.6
• Gene: LOC1271847 / 1271847
• VectorBaseID: AGAMI1_013298
• Length: 398
• Species: Anopheles gambiae
• Alignment Length: 349
• Identity: 231/349 - (66%)
• Similarity: 264/349 - (75%)
• Gaps: 41/349 - (11%)

  Fly    27 SENGDAGAAGSTNGSSDNQSAASGQ--------------RDDDRKLFVGGLSWETTEKELRDHFG 77
            |.||::.|. :|||:::|.:.|:..              ||||||||||||||||::|||::||.
Mosquito    60 SGNGNSEAT-NTNGNTENHTTATTTTTTTTTTAAATATVRDDDRKLFVGGLSWETSDKELKEHFS 123

  Fly    78 KYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGG 142
            :||:||||||||||.|||||||||||:.:.::||||.|..||:||:|||||||||||:|||||||
Mosquito   124 QYGDIESINVKTDPNTGRSRGFAFIVYKSADSIDKVVAVSEHVINNKKVDPKKAKARYGKIFVGG 188

  Fly   143 LTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVD 207
            ||:|||||||||:||||||||||||||||||:||||||||||||||||.:|||||||.|:|||||
Mosquito   189 LTSEISDEEIKTFFGQFGNIVEVEMPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVD 253

  Fly   208 VKRATPKPENQ-------MMGGMRGGPRGGMRGGRGGYGG-RGGYNNQWDGQGSYGGYGGGYG-G 263
            ||:|||||||.       ..|||||.|..||||||||.|| :|||...|.||| ||||  ||| |
Mosquito   254 VKKATPKPENMGPMGPMGGRGGMRGPPPRGMRGGRGGPGGPKGGYGQGWGGQG-YGGY--GYGQG 315

  Fly   264 YGAGGYGDY---YAGGYYNGYDYGYDGYGYGGGFEGN--GYGGGGGGNM-GGGR-GGPRGGGGPK 321
            || ||||||   |...:|.||:.|  ||...||:.|:  ||||..||.| |||| ||||||   |
Mosquito   316 YG-GGYGDYGYDYLARWYGGYNNG--GYDLSGGYYGDDYGYGGYDGGYMNGGGRPGGPRGG---K 374

  Fly   322 GGGGFNGGKQRG-GGGRQQRHQPY 344
            |.|.:.|||||| .|||||||.||
Mosquito   375 GAGAYGGGKQRGNSGGRQQRHAPY 398

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	51/70 (73%)
		RRM2_hnRNPD_like	137..211	CDD:240775	66/73 (90%)
LOC1271847	XP_310701.6	None