DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and LOC1271032

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:XP_309774.2 Gene:LOC1271032 / 1271032 VectorBaseID:AGAMI1_014965 Length:393 Species:Anopheles gambiae


Alignment Length:92 Identity:21/92 - (22%)
Similarity:47/92 - (51%) Gaps:1/92 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITF-DSEQVVTDLLKTPKQKI 201
            :|||.:..|.::|::|..|.:.|.::.:::.||::..:.||:.|..: |.|..::.:......:.
Mosquito    16 VFVGNIPYEATEEKLKDIFCEVGPVLSLKLVFDRESGKPKGYGFCEYKDQETALSAMRNLNGYEF 80

  Fly   202 AGKEVDVKRATPKPENQMMGGMRGGPR 228
            .|:.:.|..|..:.....|..:..||:
Mosquito    81 GGRALRVDNACTEKSRMEMAALLQGPQ 107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763
RRM2_hnRNPD_like 137..211 CDD:240775 17/73 (23%)
LOC1271032XP_309774.2 None
Blue background indicates that the domain is not in the aligned region.

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