Protein Alignment sqd and msi2

DIOPT Version :9

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: XP_004911774.1
• Gene: msi2 / 100038158
• XenbaseID: XB-GENE-488852
• Length: 407
• Species: Xenopus tropicalis
• Alignment Length: 391
• Identity: 119/391 - (30%)
• Similarity: 160/391 - (40%)
• Gaps: 104/391 - (26%)

  Fly    42 SDNQSAASGQRDDDR----KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFI 102
            :|...|.||..:|.:    |:|:|||||:|:...|||:|.|:|||....|..||.|.|||||.|:
 Frog     3 ADGSQATSGSPNDSQHDPGKMFIGGLSWQTSPDSLRDYFNKFGEIRECMVMRDPTTKRSRGFGFV 67

  Fly   103 VFTNTEAIDKVSAADEHIINSKKVDPK---------KAKARHGKIFVGGLTTEISDEEIKTYFGQ 158
            .|.:..::|||.|...|.::||.:|||         |...|..|||||||:.....|::|.||.|
 Frog    68 TFADPASVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQ 132

  Fly   159 FGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGM 223
            ||.:.:..:.|||..::.:||.|:||:.|.||..:.:....:|..|.|:.|:|.|| |.....|.
 Frog   133 FGKVEDAMLMFDKTTNRHRGFGFVTFEIEDVVEKVCEIHFHEINNKMVECKKAQPK-EVMFPPGT 196

  Fly   224 RGGPRG------------GMRG--------GRGGYGGRGGYNNQWDGQGSYGGYG---------- 258
            ||..||            ||.|        |||..|....|:.|:.|..:...||
 Frog   197 RGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYSYQFPGFPAAAAYGPVAAAAVAAA 261

  Fly   259 -----GGYGGYGAGG-------YGDYYAGG---------------------------------YY 278
                 ..||.|...|       :.||.:.|                                 ..
 Frog   262 RGSGIPDYGFYTTPGDQRATLSFADYGSMGPRTAQMLRSEHAASASNSPLHHLPSPDQFKSPAVL 326

  Fly   279 NGY----DYGYDGYGYG------GGFEGNGYGGG-----GGGNMGGGRGGPRGGGGPKGGGGFNG 328
            |.|    :||......|      |||.|....|.     |..:...|.|.......|:.|.||:.
 Frog   327 NSYSAQPNYGAPASPAGANPARPGGFPGANSPGPVADLYGTASQDSGVGNYISAASPQPGSGFSH 391

  Fly   329 G 329
            |
 Frog   392 G 392

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	34/70 (49%)
		RRM2_hnRNPD_like	137..211	CDD:240775	29/73 (40%)
msi2	XP_004911774.1	RRM	<2..162	CDD:223796	66/158 (42%)
		RRM1_MSI	23..97	CDD:241020	36/73 (49%)
		RRM2_MSI	111..184	CDD:240769	28/72 (39%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910