DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sqd and msi2a

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:XP_073769523.1 Gene:msi2a / 100002680 ZFINID:ZDB-GENE-030826-25 Length:431 Species:Danio rerio


Alignment Length:424 Identity:125/424 - (29%)
Similarity:167/424 - (39%) Gaps:138/424 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 DAGAAGSTNGS-SDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTG 94
            :|.|:..|:|| :|:|       .|..|:|:|||||:|:...|||:|.|:|||....|..||.|.
Zfish     2 EADASQVTSGSLNDSQ-------HDPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTK 59

  Fly    95 RSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPK---------KAKARHGKIFVGGLTTEISDE 150
            |||||.||.|.:..::|||.|...|.::||.:|||         |...|..|||||||:.....|
Zfish    60 RSRGFGFITFADVSSVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSASTVVE 124

  Fly   151 EIKTYFGQFGNIVEVEMPFDKQKS------------------------QRKGFCFITFDSEQVVT 191
            ::|.||.|||.:.:..:.|||..:                        |:.||.|:||::|.:|.
Zfish   125 DVKQYFEQFGKVEDAMLMFDKTTNRHRDLRRREELTMTTGFKSNEEVLQKAGFGFVTFENEDIVE 189

  Fly   192 DLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRG------------GMRG--------GRG 236
            .:.:....:|..|.|:.|:|.|| |.....|.||..|.            ||..        |||
Zfish   190 KVCEIHFHEINNKMVECKKAQPK-EVMFPPGTRGRARSLPYTMDAFMLGMGMLSYPNIVATYGRG 253

  Fly   237 GYGGRGGYNNQWDG--QGSYG-----------GYG------GGYGGY--GAG-GYGDYYAGGYYN 279
            ..|....|:.|:.|  ..:||           |.|      .||..|  .|| |:.||   |:|:
Zfish   254 YTGFSPSYSYQFPGFPATAYGPVAAAAVAAARGSGRATRGRSGYMAYPQNAGPGFPDY---GFYS 315

  Fly   280 G-----------YDYGYDGYGYG-----------------------------------GGFEGNG 298
            |           .||...|...|                                   |||.|..
Zfish   316 GPGDQRAAPCSFADYATLGPHTGQMLQSEHVTSTCNSPSQHHPSPDHFKSSGANPPRPGGFPGAN 380

  Fly   299 YGGG-----GGGNMGGGRGGPRGGGGPKGGGGFN 327
            ..|.     |..:.....|.......|:.|.|||
Zfish   381 SPGPVADLYGPSSQDSAVGNYISAASPQPGSGFN 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 35/70 (50%)
RRM2_hnRNPD_like 137..211 CDD:240775 29/97 (30%)
msi2aXP_073769523.1 None

Return to query results.
Submit another query.