DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-IV and nectin3a

DIOPT Version :10

Sequence 1:NP_001034052.2 Gene:side-IV / 41657 FlyBaseID:FBgn0038156 Length:1001 Species:Drosophila melanogaster
Sequence 2:XP_073779583.1 Gene:nectin3a / 793240 ZFINID:ZDB-GENE-130530-670 Length:644 Species:Danio rerio


Alignment Length:487 Identity:114/487 - (23%)
Similarity:174/487 - (35%) Gaps:98/487 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 HPFPSPNVWRQLLLPLL--MLSGISQVCSTYVEQDELMQNLDRPVPLTTVQGVLGRQAMLPCDI- 95
            |.|.:..::|: |||||  :.|....|.|..|           .|| ..|..|||:...|.|.: 
Zfish     7 HFFGNTTLFRR-LLPLLGFLFSACDGVWSNQV-----------VVP-AQVTSVLGKNVTLSCRME 58

  Fly    96 ---------SPQER--DDAVYMVLWFREGDGEPIYNFDVRGRQFGQARLWSSPTAFGTRAHF-SS 148
                     |..||  ...:..:..|     .|:|...|...             :..|.|| ..
Zfish    59 MSSNLSLTQSSWERHLPSGIITLAVF-----NPVYGTSVADE-------------YSRRVHFLKP 105

  Fly   149 TTHPAQLKIDNIRIEDEGVYRCRVDFRNSPTRNLKINLTVIVPPDRPVIYGQNRHEKAGNVE-SF 212
            :.|...:.:..:...|.|:|.|::............|:.|:|   .|.:|     ...|::. :.
Zfish   106 SVHDVSIVLQGVGFADIGMYTCKMVTFELGNMQASTNVDVMV---EPKVY-----VSPGSLSLTA 162

  Fly   213 SEGNDIVLSCEVSGGRPRPNVTWYLD---NTAIDESFEQRPDGKTINHLSYPNVGRQHLNSR-LM 273
            .:|..:|.:|....|||...|.|..|   .||:....|  |:|.|...:.|.....:..:.| |.
Zfish   163 DDGETLVATCTAERGRPAAEVFWESDLPGQTAVVTQSE--PEGTTTTLVHYVLAPTRASHGRSLS 225

  Fly   274 CVASNTNLTPPNNRVVILDVNLKPIAVHILTKDRFVSADRTYDVECKSSGSKPPALITWWKGSKQ 338
            ||..:..|:........|:|...|..:.|..|:.:....:...::||:: :.||||...|.....
Zfish   226 CVVRHPALSRDFRIPYRLNVFFVPDVMVIGGKNVWYVGQKDVQLDCKAN-ANPPALFYLWTRLDA 289

  Fly   339 LKKLTKNFNEPDNQSLSILTFTPGRE--DDGKYLTCRAENQFIDGSAIEDKWRLIVH-----YQP 396
            |.....|.:   |.|   |.||...|  |.|:| .|..:|..  |....|...|::.     ..|
Zfish   290 LMPAGVNMH---NGS---LVFTRPLEATDSGQY-RCEVQNDV--GQNFHDVPFLVLDPPPTTAAP 345

  Fly   397 TTTLKIGSSLNPD-----DIKEGDDAYFECIVLANPKPYKMSWFHNGKELQHNISAGVILSDQSL 456
            |||.....||:||     .......|:|.....::|:...:|....|      |..|:::....|
Zfish   346 TTTTTFSKSLHPDTSLTITAPINQRAHFSSPTRSSPRDADLSTLVGG------IVGGILILVLLL 404

  Fly   457 VLQSV-----SRASAGDYTCLAVNSEGKGPSN 483
            .|...     .|...|||    ...:..|||:
Zfish   405 ALAGAFYMRRRRTFRGDY----YTKQYIGPSD 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IVNP_001034052.2 V-set 79..188 CDD:462230 22/121 (18%)
Ig 210..281 CDD:472250 20/75 (27%)
Ig strand B 218..222 CDD:409353 1/3 (33%)
Ig strand C 232..236 CDD:409353 1/3 (33%)
Ig <317..392 CDD:472250 23/76 (30%)
Ig strand C 329..333 CDD:409353 1/3 (33%)
Ig strand E 355..359 CDD:409353 1/3 (33%)
Ig strand F 369..374 CDD:409353 2/4 (50%)
Ig strand G 385..388 CDD:409353 1/2 (50%)
Ig 411..479 CDD:472250 13/72 (18%)
Ig strand B 417..421 CDD:409353 2/3 (67%)
Ig strand C 431..435 CDD:409353 1/3 (33%)
Ig strand E 454..458 CDD:409353 1/3 (33%)
Ig strand F 468..473 CDD:409353 2/4 (50%)
Ig 494..576 CDD:472250
Ig strand B 511..515 CDD:409353
Ig strand C 525..529 CDD:409353
Ig strand E 551..555 CDD:409353
Ig strand F 566..570 CDD:409353
fn3 593..675 CDD:394996
nectin3aXP_073779583.1 None
Blue background indicates that the domain is not in the aligned region.

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