DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-IV and cadm3

DIOPT Version :10

Sequence 1:NP_001034052.2 Gene:side-IV / 41657 FlyBaseID:FBgn0038156 Length:1001 Species:Drosophila melanogaster
Sequence 2:XP_073777218.1 Gene:cadm3 / 692273 ZFINID:ZDB-GENE-060512-196 Length:536 Species:Danio rerio


Alignment Length:556 Identity:114/556 - (20%)
Similarity:182/556 - (32%) Gaps:181/556 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 PNVWRQLLLPLLMLSGI--SQVCSTYVEQDELMQNLDRPVPLTTVQGV-LGRQAMLPCDISPQER 100
            |:..|..|..|...:.|  :.|.|.||..|:..|      |:|..:.| :|....|.|.:  :|.
Zfish    13 PSFQRAALRALAAFTMILATSVRSNYVYDDDPFQ------PVTQDETVAVGGVVTLTCGV--KEN 69

  Fly   101 DDAVYMVLWFREGDGEPIYNFDVRGRQFGQARLWSSPTAFGTRAHFSSTTHPAQLKIDNIRIEDE 165
            |::  .:.|..... :.:|..:.|..:..:.:|            ..||.....:.|.::::.|:
Zfish    70 DNS--SLQWSNTAQ-QTLYFGEKRALRDNRIQL------------VKSTATELIITIGDVQLSDD 119

  Fly   166 GVYRCRVDFRNSPTRNLKINLTVIVPPDRPVIYGQNRHEKAGNVESFSEGNDIVLSCEVSGGRPR 230
            |.|.|.:  ...|.|..:..:||:..|.:|||.|..     |.|:   ||..:.|:|..||.:|.
Zfish   120 GEYTCSI--FTMPVRTARATVTVLGVPGKPVITGFE-----GAVQ---EGGKVTLTCTSSGSKPP 174

  Fly   231 PNVTWYLDNTAIDESFEQRPDGKTINHLSYPNVGRQHLNSRLMCVASNTNLTPPNNRVVILDVNL 295
            ..:.||.|:..|    :.|||                      .|.||.                
Zfish   175 AKLHWYRDHVEI----QGRPD----------------------VVESNP---------------- 197

  Fly   296 KPIAVHILTKDRFVSADRTYDVECKSSGSKPPALITWWKGSKQLKKLTKNFNEPDNQSLSILTFT 360
                                                               |||.....|.||.:
Zfish   198 ---------------------------------------------------NEPTYTVTSELTLS 211

  Fly   361 PGREDDGKYLTCRAENQFIDGSAIEDKWRLIVHYQPTTTLKIGSSLNPD-DI-KEGDDAYFECIV 423
            ..|:|:...:.|..::..|.......:..|.|.:.|..      |::|: |: :||:..|.:|:.
Zfish   212 VSRDDNDALIACAVDHPSIANGDKRTEQPLNVLFSPRV------SIHPESDLPREGEKFYLQCVG 270

  Fly   424 LANPKPYKMSWFHNGKELQHNISA-GVILSDQSLVLQSVSRASAGDYTCLAVNSEGKG------- 480
            ..||:|....|.....||...... |..|.     .:|::::..|.|.|.|.|..|.|       
Zfish   271 NGNPEPNAFVWRRKEGELPPLAKVDGAFLR-----FESLNKSDNGVYECQADNGIGMGDVAHTLL 330

  Fly   481 ---------------PSNPVTLRIRYAPICATDHEELLGALKHETLPLKCEVDSSPPADSFQWTF 530
                           ||:.|      :| .:.....:|.:.:.||||......||....:|....
Zfish   331 VQEGDPDYLIPSFTLPSSTV------SP-TSLSQTSVLPSTEGETLPPTSSSSSSTVIPTFTLPI 388

  Fly   531 NSS-GEQTELPARLHSSETGMSRL--------NYTP 557
            .|: .....:|....|..|.:|..        .|||
Zfish   389 PSTPSAPPTVPPSPESPTTALSNALFPELTPPAYTP 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IVNP_001034052.2 V-set 79..188 CDD:462230 20/109 (18%)
Ig 210..281 CDD:472250 17/70 (24%)
Ig strand B 218..222 CDD:409353 1/3 (33%)
Ig strand C 232..236 CDD:409353 0/3 (0%)
Ig <317..392 CDD:472250 11/74 (15%)
Ig strand C 329..333 CDD:409353 0/3 (0%)
Ig strand E 355..359 CDD:409353 2/3 (67%)
Ig strand F 369..374 CDD:409353 1/4 (25%)
Ig strand G 385..388 CDD:409353 0/2 (0%)
Ig 411..479 CDD:472250 18/69 (26%)
Ig strand B 417..421 CDD:409353 1/3 (33%)
Ig strand C 431..435 CDD:409353 0/3 (0%)
Ig strand E 454..458 CDD:409353 0/3 (0%)
Ig strand F 468..473 CDD:409353 2/4 (50%)
Ig 494..576 CDD:472250 16/73 (22%)
Ig strand B 511..515 CDD:409353 2/3 (67%)
Ig strand C 525..529 CDD:409353 1/3 (33%)
Ig strand E 551..555 CDD:409353 1/11 (9%)
Ig strand F 566..570 CDD:409353
fn3 593..675 CDD:394996
cadm3XP_073777218.1 None
Blue background indicates that the domain is not in the aligned region.

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