DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment side-IV and Nphs1

DIOPT Version :9

Sequence 1:NP_001034052.2 Gene:side-IV / 41657 FlyBaseID:FBgn0038156 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_072150.1 Gene:Nphs1 / 64563 RGDID:620460 Length:1252 Species:Rattus norvegicus


Alignment Length:1005 Identity:200/1005 - (19%)
Similarity:309/1005 - (30%) Gaps:368/1005 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 QVCSTYVEQDELMQN---------------LDRPVPLTTVQGVL--------------------G 86
            ::|.|..|...:.|:               ||.|:..:....:|                    |
  Rat   208 KLCITEAEARVIPQSSDNGQLLVCEGSNPALDTPIKASFTMNILFPPGPPVIDWPGLNEGHVRAG 272

  Fly    87 RQAMLPCDI---SPQERDDAVYMVLWFREGDGEPIYNFDVRGRQFGQARLWSSPTAFGTRAHFSS 148
            ....|||..   :|..      .:.|.:  :|:|:                  .||:||. |..:
  Rat   273 ENLELPCTARGGNPPA------TLQWLK--NGKPV------------------STAWGTE-HAQA 310

  Fly   149 TTHPAQLKIDNIRIEDEGVYRCRVDFRNS---PTRNLKINLTVIVPPDRPVIYGQNRHEKAGNVE 210
            ..|  .:.:..:|.||.|. |......||   .|:...|.|.|..||....|.|.         .
  Rat   311 VAH--SVLVMTVRPEDHGA-RLSCQSYNSVSAGTQERSITLQVTFPPSAITILGS---------V 363

  Fly   211 SFSEGNDIVLSCEVSGGRPRPNVTWYL--------DNTAID------------------------ 243
            |.||..::.|.|.....|||..:.|:|        |.|.:|                        
  Rat   364 SQSENKNVTLCCLTKSSRPRVLLRWWLGGRQLLPTDETVMDGLHGGHISMSNLTFLVRREDNGLP 428

  Fly   244 -------ESFEQRPDGKTIN-HLSYP------------NVGRQHLNSRLMCVASNTN-------- 280
                   ::|.:....|::. ::.||            ...|.....||:|:|...|        
  Rat   429 LTCEAFSDAFSKETFKKSLTLNVKYPAQKLWIEGPPEGQYIRTGTRVRLVCLAIGGNPDPSLIWF 493

  Fly   281 -------------------------------------LTPPNNRVVI------------LDVNLK 296
                                                 :.||:||...            |.|...
  Rat   494 KDSRPVSEPRQPQEPRRVQLGSVEKSGSTFSRELVLIIGPPDNRAKFSCKAGQLSASTQLVVQFP 558

  Fly   297 PIAVHILTKDRFVSADRTYDVECKSSGSKPPALITWWKGSKQLKKL-TKNFNEP---DNQSLSIL 357
            |..:.||.....:......::.|.|..|.||..::|.|..::|:.: .|..:.|   ...|.|:.
  Rat   559 PTNLTILANSSALRPGDALNLTCVSISSNPPVNLSWDKEGERLEDVAAKPQSAPFKGSAASRSVF 623

  Fly   358 TFTPGREDDGKYLTCRAENQFIDGSAIEDKWRLIVHYQPTTTLKIGSSLNPDDIKEGDDAYFECI 422
            .....| |.|:.:||||.::.: ...:...:|..|.|.|..   :|..:....:.|.........
  Rat   624 LRVSSR-DHGQRVTCRAHSEAL-RETVSSFYRFNVLYPPEF---LGEQVRAVTVVEQGQVLLPVS 683

  Fly   423 VLANPKPYKMSWFHNGKEL------QHNISAGVILSDQSLVLQSVSRASAGDYTCLAVNSEGKGP 481
            |.|||.|...:|...|..|      :|.     |||..:|.|.:|:||..|.|.....||||...
  Rat   684 VSANPAPEAFNWTFRGYRLSPAGGPRHR-----ILSGGALQLWNVTRADDGFYQLHCQNSEGTAE 743

  Fly   482 SNPVTLRIRYAP-------------------ICATDHEELLGAL--------KHETLPL------ 513
            : .:.|.:.|||                   :|..|...:|..:        :.|.|.|      
  Rat   744 A-LLKLDVHYAPTIRALRDPTEVNVGGSVDIVCTVDANPILPEMFSWERLGEEEEDLNLDDMEKV 807

  Fly   514 ---------------------KCEVDS----------------SPPADSFQWT----FNSSGEQT 537
                                 :|.||:                :|..|  |.|    ..::|:.|
  Rat   808 SKGSTGRLRIRQAKLSQAGAYQCIVDNGVAPAARGLVRLVVRFAPQVD--QPTPLTKVAAAGDST 870

  Fly   538 ELPARLHSSETGMSRLNYT----------------------------------PSTDLDYGTISC 568
            . .|.||....|:..:::|                                  .|...||....|
  Rat   871 S-SATLHCRARGVPNIDFTWTKNGVPLDLQDPRYTEHRYHQGVVHSSLLTIANVSAAQDYALFKC 934

  Fly   569 WAKNSIGTQKSPCVFQIVAAGRPFPLQNCSVTNQSVDSLQVDCLEGFDGGLPQGFMLELVELNTL 633
            .|.|::|:..:.  .|:|:..||.|.....|.:.|..|:.::...||||||||.|.:....|.|.
  Rat   935 TATNALGSDHTN--IQLVSISRPDPPLGLKVVSISPHSVGLEWKPGFDGGLPQRFQIRYEALETP 997

  Fly   634 RLARNITVSHTPVTFVIDNLDQAATYRMVIFAVNAKGRSEPTIIDDINFKGVAKFTGASTGLS-- 696
            .......:.....||.:..|..:..||:.:.|.||.|.|      .:..||: :.:..:.|..  
  Rat   998 GFLHVDVLPTQATTFTLTGLKPSTRYRIWLLASNALGDS------GLTDKGI-QVSVTTPGPDQA 1055

  Fly   697 ------------------MPLSPFL---AGLTLF----C--GLLFAIFCIML---------AAIY 725
                              :||.|.|   .||.|.    |  |||:......|         |...
  Rat  1056 PEDTDHQLPTELPPGPPRLPLLPVLFAVGGLLLLSNASCVGGLLWRRRLRRLAEEISEKTEAGSE 1120

  Fly   726 RRISNRRSDSNLKVAKHTQLTIPADCQLDP 755
            .||.|...:|.....:.|:.:..:..::||
  Rat  1121 DRIRNEYEESQWTGDRDTRSSTVSTAEVDP 1150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IVNP_001034052.2 V-set 79..188 CDD:284989 25/134 (19%)
IG_like 80..188 CDD:214653 25/133 (19%)
Ig 210..281 CDD:299845 23/167 (14%)
Ig 319..392 CDD:299845 20/76 (26%)
IG_like 319..383 CDD:214653 19/67 (28%)
IG_like 412..489 CDD:214653 25/82 (30%)
IGc2 413..478 CDD:197706 22/70 (31%)
Ig_3 509..572 CDD:290638 22/143 (15%)
fn3 593..675 CDD:278470 25/81 (31%)
Nphs1NP_072150.1 Ig 52..128 CDD:299845
IG_like 52..127 CDD:214653
C2-set_2 155..242 CDD:285423 6/33 (18%)
Ig_3 256..335 CDD:290638 19/108 (18%)
IG_like 268..350 CDD:214653 24/111 (22%)
C2-set_2 358..440 CDD:285423 16/90 (18%)
I-set 460..555 CDD:254352 11/94 (12%)
Ig 472..555 CDD:299845 10/82 (12%)
Ig 563..646 CDD:299845 21/84 (25%)
IG_like 670..750 CDD:214653 25/85 (29%)
Ig 676..750 CDD:299845 24/79 (30%)
Ig_3 753..834 CDD:290638 10/80 (13%)
IG_like 762..848 CDD:214653 9/85 (11%)
Ig 848..956 CDD:299845 21/112 (19%)
IG_like 859..949 CDD:214653 14/92 (15%)
FN3 955..1049 CDD:238020 28/100 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1043..1067 1/24 (4%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1113..1144 6/30 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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