DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-IV and mcama

DIOPT Version :10

Sequence 1:NP_001034052.2 Gene:side-IV / 41657 FlyBaseID:FBgn0038156 Length:1001 Species:Drosophila melanogaster
Sequence 2:XP_068077634.1 Gene:mcama / 566921 ZFINID:ZDB-GENE-090218-29 Length:638 Species:Danio rerio


Alignment Length:704 Identity:171/704 - (24%)
Similarity:266/704 - (37%) Gaps:165/704 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 LLMLSGISQVCS----TYVEQDELMQNLDRPVPLTTVQGVLGRQAMLPCDISPQERDDAVYMVLW 109
            ||::  :.|:|:    .:.:.|..|::        ||:..:...|.:|| :....:...:.||.|
Zfish    14 LLLI--VLQICALAWQAWAQVDLRMED--------TVEVYMDDSAEIPC-LYTFTQAPMMVMVQW 67

  Fly   110 F-REGDGEPIYNFDVRGR-QFGQARLW--SSPTAFGTRAHFSSTTHPAQLKIDNIRIEDEGVYRC 170
            | ||.||       ||.| .:....:.  ...|.:..|....|.:....|.|.::::.||..:.|
Zfish    68 FVRERDG-------VRVRISYSDLTMQKVDENTTYSDRISVRSNSDGETLTIQDVKLSDEREFFC 125

  Fly   171 RVDFRNSPTRNLKINLTVIVPPDRPVIYGQNRHEKAGNVESFSEGNDIVLSCEVSGGRPRPNVTW 235
            :|...::.:...:..|.|..||:.|||.|     ....|....|....:.|||...|.|:||:||
Zfish   126 QVSGFSAGSDERRTLLKVFDPPEPPVIEG-----ALSGVSVSGESTAKIASCETRDGYPKPNITW 185

  Fly   236 YLDNTAIDESFEQRPDGKTINHLSYPNVGRQHLNSRLMCVASNTNLTPPNNRVVILDVNLKPIAV 300
            |.|:..|      .|....:|.::.  |.|:  :|.|..|.|              |::.|   |
Zfish   186 YRDHIPI------HPANGLVNVVTL--VTRE--SSGLYTVQS--------------DLHYK---V 223

  Fly   301 HILTKDRFVSADRTYDV--ECKSSGSK--------PPALITWWKGSKQLKKLTKN---------- 345
            ....||...|.:.:|.|  ..::|.||        |.:.:..||.|.|  .|.|.          
Zfish   224 TKEDKDAHFSCEVSYFVPGAVRTSESKGVNITVYYPTSSVEMWKESPQ--GLVKEGDTVEIHCQG 286

  Fly   346 ---------FN------EPDNQSLSILTFTPGREDDGKYLTCRA-ENQFIDGSAIEDKWRLIVHY 394
                     ||      |.|:....::.....|.|.|.| .|.| :...::...:.|..:|.|||
Zfish   287 DGNPPAPIIFNREQSDVELDSYEGLLVLKEVSRMDSGVY-ECHALDLDAVNNDEVLDTLQLTVHY 350

  Fly   395 -QPTTTLKIGSSLNPDDIKEGDDAYFECIVLANPKPYKMSWFHNGKELQHNISAGVILSDQSLVL 458
             .|...:...|.:    :.:|:.....|..|::.:...: ||..|.|    :..|.|:.     |
Zfish   351 LDPAVVVPKDSEV----MLKGESLTATCNALSSLETSTV-WFKKGLE----VGRGHIMQ-----L 401

  Fly   459 QSVSRASAGDYTC-LAVNS-EGKGPSNPVTLRIRYAP---ICATDHE--ELLGALKHETLPLKCE 516
            |..:..:||.|.| :.|.| .|...|..|.:.::.||   ....|.|  |.:||    .:.|.||
Zfish   402 QDATFDTAGRYDCEVTVPSLPGLLTSGSVHIIVQGAPQIKDAERDFELMEKVGA----WVNLTCE 462

  Fly   517 VDSSP-PADSFQWTFNSSGEQT-------ELPARLHSSETGMSRLNYTPSTDLDYGTISCWAKNS 573
            |...| ||  ..|:...|..|:       |...|:||..|    |..|..|     ...|.:.|.
Zfish   463 VRGYPRPA--ITWSITGSQSQSWREVDKKETEDRIHSVVT----LKVTTDT-----VAICNSTND 516

  Fly   574 IGTQKSPCVFQIVAAGRPFPLQNCSVTNQSVDSLQVDCLEGFDGGLPQGFMLELVELNTLRLARN 638
            .|.:..  ::.|.:.  || ||..:....|||:              .|.::.::.::.|.||  
Zfish   517 FGIETK--IYNIKSI--PF-LQTPTARKTSVDN--------------SGVIIVVIIVSILLLA-- 560

  Fly   639 ITVSHTPVTFVIDNLDQAATYRMVIFAVNAKGRSEPTIIDDINFKGVAKFTGAS 692
            |..|.....:....|....:.:..|  :||....|.|..|||..:..||.|..|
Zfish   561 ILGSVFYFLYKKGKLLCGRSGKQEI--INAYSTKEKTNKDDIVVEMKAKKTEES 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IVNP_001034052.2 V-set 79..188 CDD:462230 26/112 (23%)
Ig 210..281 CDD:472250 21/70 (30%)
Ig strand B 218..222 CDD:409353 0/3 (0%)
Ig strand C 232..236 CDD:409353 2/3 (67%)
Ig <317..392 CDD:472250 23/110 (21%)
Ig strand C 329..333 CDD:409353 0/3 (0%)
Ig strand E 355..359 CDD:409353 0/3 (0%)
Ig strand F 369..374 CDD:409353 2/4 (50%)
Ig strand G 385..388 CDD:409353 1/2 (50%)
Ig 411..479 CDD:472250 17/69 (25%)
Ig strand B 417..421 CDD:409353 0/3 (0%)
Ig strand C 431..435 CDD:409353 0/3 (0%)
Ig strand E 454..458 CDD:409353 0/3 (0%)
Ig strand F 468..473 CDD:409353 2/5 (40%)
Ig 494..576 CDD:472250 25/91 (27%)
Ig strand B 511..515 CDD:409353 1/3 (33%)
Ig strand C 525..529 CDD:409353 0/3 (0%)
Ig strand E 551..555 CDD:409353 1/3 (33%)
Ig strand F 566..570 CDD:409353 1/3 (33%)
fn3 593..675 CDD:394996 16/81 (20%)
mcamaXP_068077634.1 V-set 37..143 CDD:462230 26/121 (21%)
C2-set_2 161..238 CDD:400489 27/103 (26%)
Ig strand B 165..172 CDD:409353 0/6 (0%)
Ig strand C 182..186 CDD:409353 2/3 (67%)
Ig strand E 217..221 CDD:409353 2/17 (12%)
Ig strand F 231..236 CDD:409353 1/4 (25%)
Ig_3 274..329 CDD:464046 10/55 (18%)
Ig_2 366..434 CDD:464026 20/77 (26%)
Ig 452..>506 CDD:472250 19/63 (30%)
Ig strand B 457..461 CDD:409353 1/3 (33%)
Ig strand C 470..473 CDD:409353 1/4 (25%)

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