DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-IV and cadm4

DIOPT Version :10

Sequence 1:NP_001034052.2 Gene:side-IV / 41657 FlyBaseID:FBgn0038156 Length:1001 Species:Drosophila melanogaster
Sequence 2:XP_073781010.1 Gene:cadm4 / 492787 ZFINID:ZDB-GENE-041114-138 Length:425 Species:Danio rerio


Alignment Length:390 Identity:80/390 - (20%)
Similarity:126/390 - (32%) Gaps:151/390 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   141 GTRA----HFSS---TTHPAQLKIDNIRIEDEGVYRCRVDFRNSPTRNLKINLTVIVPPDRPVIY 198
            ||||    .|..   |....::.:.|:.:.|||.|.|::  ....|.:....|:|:|||:.|.:.
Zfish    84 GTRALKDDRFQMVLFTPKLVRITLTNVSVSDEGGYFCQL--YTDDTHHQVATLSVVVPPEVPSVE 146

  Fly   199 GQNRHEKAGNVESFSEGNDIVLSCEVSGGRPRPNVTWYLDNTAIDESFEQRPDGKTINHLSYPNV 263
            .:....:.|.||         |:|.....:|...:.|..|...|.....|:.:|||::       
Zfish   147 VKTEAVEGGEVE---------LTCLSLRSKPPATLRWVRDRREIPGVISQQENGKTVS------- 195

  Fly   264 GRQHLNSRLMCVASNTNLTPPNNRVVILDVNLKPIAVHILTKDRFVSADRTYDVECKSSGSKPPA 328
                        .|||                  |.:.:..||...:      :.|::|   .||
Zfish   196 ------------VSNT------------------IRIPVERKDNRAA------LSCEAS---HPA 221

  Fly   329 LITWWKGSKQLKKLTKNFNEPDNQSLSILTFTPGREDDGKYLTCRAENQFIDGSAIEDKWRLIVH 393
            |::        :|..::::                                          |.||
Zfish   222 LVS--------QKRVRHYS------------------------------------------LDVH 236

  Fly   394 YQPTTTLKIGSSLNPDDI-KEGDDAYFECIVLANPKPYKMSWFHNGKELQHNI-SAGVILSDQSL 456
            :.||..:     :.|..| :|||.....|.|..||.|..:.|......|.... ..|.||.    
Zfish   237 FAPTVKI-----VPPQGILREGDSLSLTCSVTGNPLPRDIQWSRVNDTLPERAEKTGNILH---- 292

  Fly   457 VLQSVSRASAGDYTCLAVNSEGKGPSNPVTLRIRYAPICATDHEELL---------GALKHETLP 512
             :..:|::..|.|.|.|.|:.|:                |.||..||         .|:.|..||
Zfish   293 -MSRLSQSHNGTYLCQAHNNYGR----------------AADHYTLLVYVSVAQSHPAIAHPNLP 340

  Fly   513  512
            Zfish   341  340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IVNP_001034052.2 V-set 79..188 CDD:462230 14/53 (26%)
Ig 210..281 CDD:472250 14/70 (20%)
Ig strand B 218..222 CDD:409353 1/3 (33%)
Ig strand C 232..236 CDD:409353 0/3 (0%)
Ig <317..392 CDD:472250 7/74 (9%)
Ig strand C 329..333 CDD:409353 1/3 (33%)
Ig strand E 355..359 CDD:409353 0/3 (0%)
Ig strand F 369..374 CDD:409353 0/4 (0%)
Ig strand G 385..388 CDD:409353 0/2 (0%)
Ig 411..479 CDD:472250 20/69 (29%)
Ig strand B 417..421 CDD:409353 0/3 (0%)
Ig strand C 431..435 CDD:409353 0/3 (0%)
Ig strand E 454..458 CDD:409353 0/3 (0%)
Ig strand F 468..473 CDD:409353 2/4 (50%)
Ig 494..576 CDD:472250 9/28 (32%)
Ig strand B 511..515 CDD:409353 2/2 (100%)
Ig strand C 525..529 CDD:409353
Ig strand E 551..555 CDD:409353
Ig strand F 566..570 CDD:409353
fn3 593..675 CDD:394996
cadm4XP_073781010.1 None
Blue background indicates that the domain is not in the aligned region.

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