DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment side-IV and side-II

DIOPT Version :10

Sequence 1:NP_001034052.2 Gene:side-IV / 41657 FlyBaseID:FBgn0038156 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_001400995.1 Gene:side-II / 3346206 FlyBaseID:FBgn0259213 Length:1067 Species:Drosophila melanogaster


Alignment Length:1064 Identity:357/1064 - (33%)
Similarity:516/1064 - (48%) Gaps:180/1064 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 DRPVPLTTVQGVLGRQAMLPCDISPQERDDAVYMVLWFREGDGEPIYNFDVRGRQF-GQARLWSS 136
            |..|....:..|.|:...|||.|:  |..|.||||||||:..|.|:|:||||.::. .|.|.||:
  Fly    49 DSHVKTKDIDAVEGKSVSLPCPIT--EPLDNVYMVLWFRDNAGIPLYSFDVRDKESREQPRHWSA 111

  Fly   137 PTAFGTRAHFSSTTHPAQLKIDNIRIEDEGVYRCRVDFRNSPTRNLKINLTVIVPPDRPVIYGQ- 200
            |..||:||.|...:.||.|:|.:|:..|:|:||||||||.|.|::.:.||:||:.|::|:|..: 
  Fly   112 PEVFGSRAKFHFDSQPATLEIKDIKRHDQGIYRCRVDFRTSQTQSFRFNLSVIILPEQPIIMDRW 176

  Fly   201 NRHEKAGNVESFSEGNDIVLSCEVSGGRPRPNVTWYLDNTAIDESFEQRPDGKTINHLSYPNVGR 265
            .|......:....||:|||::|.|.||||:|.|.|.::...:|...|........|.|.:|:|.|
  Fly   177 GRQLNGTQLGPKQEGDDIVITCRVVGGRPQPQVRWLVNGLLVDNQNEHNSGDVIENRLLWPSVQR 241

  Fly   266 QHLNSRLMCVASNTNLTPPNNRVVILDVNLKPIAVHILTKDRFVSADRTYDVECKSSGSKPPALI 330
            ..|||...|.|.||.|..|..:..|||::|||:.|.||.....:.|||.|:|.|:||||:|.|:|
  Fly   242 NDLNSVFTCQALNTQLDKPKEKSFILDMHLKPLVVKILEPPSSMIADRRYEVSCESSGSRPNAII 306

  Fly   331 TWWKGSKQLKKLTKNFNEPDNQSLSILTFTPGREDDGKYLTCRAENQFIDGSAIEDKWRLIVHYQ 395
            ||:||.:||::...:.::  |.:.|.|:|.|..:||||.:||||||..::|..:|..|:|.|.|.
  Fly   307 TWYKGKRQLRRTKDDISK--NSTRSELSFVPTTDDDGKSITCRAENPNVNGLYLETMWKLNVVYP 369

  Fly   396 PTTTLKIGSSLNPDDIKEGDDAYFECIVLANPKPYKMSWFHNGKELQHNISAGVILSDQSLVLQS 460
            |..||::||:|.|||||||||.||||.|.:||:..|:.|.|||..|:||.||.||.|:||||||.
  Fly   370 PLVTLRLGSTLTPDDIKEGDDVYFECHVQSNPQWRKLLWLHNGIHLEHNTSARVIRSNQSLVLQK 434

  Fly   461 VSRASAGDYTCLAVNSEGKGPSNPVTLRIRYAPICA-TDHEELLGALKHETLPLKCEVDSSPPAD 524
            :::..||:|.|.|:|.||:..||.:.||::|.|:|. .|...|:||.|.||:.:.||:.:.||..
  Fly   435 ITKHYAGNYACSAINDEGETVSNQLPLRVKYTPMCKHADRVILIGASKDETVEVVCEIQADPPPR 499

  Fly   525 SFQWTFNSSGEQTELPARLHSSETGMSRLNYTPSTDLDYGTISCWAKNSIGTQKSPCVFQIVAAG 589
            :|:|.||:|||..::.:...|.....|.|.|||.||.||||:||||.|.:|||:.||:||:|.|.
  Fly   500 TFRWKFNNSGETLDVGSERFSVNGSRSILKYTPVTDQDYGTLSCWASNEVGTQQHPCLFQVVLAA 564

  Fly   590 RPFPLQNCSVTNQSVDSLQVDCLEGFDGGLPQGFMLELVELNTLRLARNITVSHTPVTFVIDNLD 654
            .|..:.||:|.|::..|:.:.|:.|:||||||.|:||:....|.....|::.:...: |.::|||
  Fly   565 LPNAVSNCTVFNRTELSVDIQCIPGYDGGLPQIFVLEMFSTRTGITRFNLSNAEEAL-FSLENLD 628

  Fly   655 --------QAATYRMVIFAVNAKGRSEPTIIDDINFKGVAKFTGASTGLSMPLSPFLAGLTL--- 708
                    :..:.|:.|::.|.||||...::.|......|..|  ...:::.|||.:.|..|   
  Fly   629 TLTSMMVQENNSLRLRIYSYNQKGRSAAYLLTDFIIGSTAYKT--DDDVTLTLSPVIVGSVLTII 691

  Fly   709 FCGLLFAIFCIMLAAIYRRISNRRSDSNLKVA--------------------KHTQLTIPADCQL 753
            ..|:..||...::..::....||...|....|                    :||.:...:...|
  Fly   692 IIGVAIAIRIFVVTFVHNLRRNRHHGSKATAAGVTAQPSDVFKGGNLEKPRWQHTDIKTKSSEDL 756

  Fly   754 -----DP-LHPGVQTDGSGNHQPHHSLLPLNCDGRNAVDCGALGDVGGGGVGVGLDGGIKGSSPI 812
                 || :.|.....||.          ....|.||.:.|:  ...|...|......:..::..
  Fly   757 VEDERDPDVIPSQYVGGSS----------AGSSGSNASNVGS--TTAGTATGSSTSTAVVANANA 809

  Fly   813 GLVAMPGD---TLRSNARNRH----------------SPMADQADI----DDTDPDVIPNQY--E 852
            ...||.|.   |..::|.:.|                ||..:....    |..:..|..||.  :
  Fly   810 AASAMAGPGGATSSASATDGHQFASGTAAAGGGASKWSPNGNVTTTMLTGDAVNATVTYNQINAQ 874

  Fly   853 KRPLKSLVSPPG------FASPSNRLMQRDYLRETELTKG--GSDVGMGAAEGLSSIGLMSSSGN 909
            :..|.:.|:..|      ..|||:.::            |  |..:|||...|| .:|:    |.
  Fly   875 RAQLLAAVAAVGGGCSSTVISPSSSIL------------GGLGKPLGMGMGMGL-GMGV----GG 922

  Fly   910 EVLHYTFRPSKQISYATL-------NKKGITTCSPPLGS-----LNYSVS--------------- 947
            .|:.   .|:...|.|||       :..|:.|..|.|||     ||...|               
  Fly   923 TVIG---SPTSLSSTATLAAHLQPAHSSGVGTLPPGLGSGGGYILNAYASGRLHHPPGGGVPGGA 984

  Fly   948 TSTPTSS-------------YHLTPQPMEVSLLSPNNPSVTSSLSEYRFRTGPEIVTTS------ 993
            |.|.|.:             :|..|.....|||..:..||...:.      .....|||      
  Fly   985 THTATLNRHHHQQQQLHHHPHHQQPHHSGSSLLMGSAGSVMGVVG------STTTATTSCNSSQD 1043

  Fly   994 ----------------NRIQESCI 1001
                            .|:.|||:
  Fly  1044 LDDNININAIKDCLMTQRVPESCV 1067

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IVNP_001034052.2 V-set 79..188 CDD:462230 52/109 (48%)
Ig 210..281 CDD:472250 28/70 (40%)
Ig strand B 218..222 CDD:409353 2/3 (67%)
Ig strand C 232..236 CDD:409353 1/3 (33%)
Ig <317..392 CDD:472250 34/74 (46%)
Ig strand C 329..333 CDD:409353 2/3 (67%)
Ig strand E 355..359 CDD:409353 2/3 (67%)
Ig strand F 369..374 CDD:409353 2/4 (50%)
Ig strand G 385..388 CDD:409353 1/2 (50%)
Ig 411..479 CDD:472250 39/67 (58%)
Ig strand B 417..421 CDD:409353 2/3 (67%)
Ig strand C 431..435 CDD:409353 1/3 (33%)
Ig strand E 454..458 CDD:409353 3/3 (100%)
Ig strand F 468..473 CDD:409353 2/4 (50%)
Ig 494..576 CDD:472250 36/82 (44%)
Ig strand B 511..515 CDD:409353 0/3 (0%)
Ig strand C 525..529 CDD:409353 1/3 (33%)
Ig strand E 551..555 CDD:409353 2/3 (67%)
Ig strand F 566..570 CDD:409353 2/3 (67%)
fn3 593..675 CDD:394996 29/89 (33%)
side-IINP_001400995.1 V-set 55..163 CDD:462230 52/109 (48%)
Ig_3 190..254 CDD:464046 26/63 (41%)
Ig <292..366 CDD:472250 34/75 (45%)
Ig strand B 292..295 CDD:409418 1/2 (50%)
Ig strand C 305..309 CDD:409418 2/3 (67%)
Ig strand E 329..333 CDD:409418 2/3 (67%)
Ig strand F 343..348 CDD:409418 2/4 (50%)
Ig strand G 359..362 CDD:409418 1/2 (50%)
Ig 382..457 CDD:472250 43/74 (58%)
Ig strand B 391..395 CDD:409405 2/3 (67%)
Ig strand C 405..409 CDD:409405 1/3 (33%)
Ig strand E 428..432 CDD:409405 3/3 (100%)
Ig strand F 442..447 CDD:409405 2/4 (50%)
Ig 486..554 CDD:409353 31/67 (46%)
Ig strand B 486..490 CDD:409353 0/3 (0%)
Ig strand C 500..504 CDD:409353 1/3 (33%)
Ig strand E 526..530 CDD:409353 2/3 (67%)
Ig strand F 540..545 CDD:409353 3/4 (75%)

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