DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-IV and Skint6

DIOPT Version :10

Sequence 1:NP_001034052.2 Gene:side-IV / 41657 FlyBaseID:FBgn0038156 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_001096669.1 Gene:Skint6 / 230622 MGIID:3649262 Length:1240 Species:Mus musculus


Alignment Length:775 Identity:144/775 - (18%)
Similarity:245/775 - (31%) Gaps:286/775 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 VPLT-------------------TVQGV-------LGRQAMLPCDISPQERDDAVYM-VLWFREG 113
            ||||                   ||.|:       ||....|.|.:||.::  |.:| :.||:..
Mouse     6 VPLTAHCVVLFLLQMVALSTEQFTVNGLESPVLVPLGGNLELSCQLSPPQQ--AKHMEIRWFKNR 68

  Fly   114 DGEPIYNFDVRGRQFGQARLWSSPTAFGTRAHFSSTTH---------PAQLKIDNIRIEDEGVYR 169
            ..||:|.:. .|:...:|.::.          :...|.         ...|:|..:...|.|.|.
Mouse    69 YSEPVYLYR-NGKDLNEAIVYK----------YVERTELLKDDIGKGKVTLRIFKVTSVDSGSYH 122

  Fly   170 C--RVD-FRNSPTRNLKINLT------VIVPPDRPVIYGQNRHEKAGNVESFSEGNDIVLSCEVS 225
            |  :.| |.......:|:..|      ::.||:                   |.|  :.|.|...
Mouse   123 CFFKDDKFYEEHIIEVKVTATSSDIQILMHPPN-------------------STG--VRLECHSG 166

  Fly   226 GGRPRPNVTW------YLDNTA------IDESFEQRPDGKTINHLSYPNVGRQHLNSRLMCVASN 278
            |..|:|::.|      |:..|:      .:|.|....| ..|...||.:..         |...|
Mouse   167 GWFPQPHMEWRDSKGEYIPATSKSHSQDENEFFNMTMD-LFIKSNSYWSAA---------CYIQN 221

  Fly   279 --------TNLTPPNNRVVIL-----------------DVNLKPIAVHILTKDRFVSADRTYD-- 316
                    .:...|..:|::|                 |:.||.|      |.||.|:....:  
Mouse   222 FVTHQEESISFVLPGTKVLLLKNIQSIFQSSSVDLEKKDMLLKSI------KSRFQSSSVDPEKK 280

  Fly   317 ----------VECKSSGSKPPALI------------------TWWKGSKQLKKLTKNFN-EPDNQ 352
                      :|..|...:..||:                  .|...|  :|...:|.: :|:.:
Mouse   281 ERLLKIIQSRIESSSVDQETKALLLESIQSSIENSTVDLETKVWLLES--IKSSIQNSSVDPETK 343

  Fly   353 SLSILTFTPGREDDGKYLTCRAENQFIDGSAIEDKWRLIVHYQPTTTLKIGSSLNPDDIKEGDDA 417
            .|.:           :.:....||..:|....|  |.|         ..|.||:....:..|...
Mouse   344 ELLL-----------ERIKSSIENSTVDLGTKE--WLL---------ESIQSSIQSSSVDLGTKK 386

  Fly   418 YFECIVLANPKPYKM-----SWFHNGKELQHNI-SAGVILSDQSLVLQSVSRASAGDYTCLAVNS 476
            ....|:.::.:.:.:     .|..  :.:|.:| |:.|.|..:.|:|:.:..:..|....|.:..
Mouse   387 MLLKIIQSSIQSFSVYIGTKEWLL--ERVQSSIQSSSVDLGTKELLLEIIQSSIEGYSVELGIEE 449

  Fly   477 ------EGKGPSNPVTLRIR--YAPICATDHEELLGALKHETLPLKCEVDSSPPADSFQWTFNSS 533
                  .....|:.|.|.|:  ...||.:..:.....|:.:...:|.          ||....||
Mouse   450 LLSKIILSSIQSSRVDLGIKELLVKICQSSIQSTSVILETKEWLVKI----------FQSNIQSS 504

  Fly   534 GEQTELPARL----HSSETGMSRLNYTPSTDLDYGTISCWAKN--------SIGTQKSPCVFQIV 586
            ....|....|    .||         ..|:.:|.|||....||        .:..:....:.:|:
Mouse   505 SMDLETKVWLVKFFQSS---------IQSSSMDLGTIKWLVKNVQSNIQSSRVDLETKRMLLEII 560

  Fly   587 AAGRPFPLQNCS-----------VTNQSVDSLQVDCLEGFDGGLPQGFMLEL---------VELN 631
            .:.    :||.|           |...|:.|..|| ||      .:.::|::         |::.
Mouse   561 QSS----IQNSSVHRGTKKMLLKVIQSSIQSFSVD-LE------TKEWLLKIIQSSIQSSSVDIG 614

  Fly   632 T---------LRLARNITVSHTPVTFVIDNLDQAATYRMVIFAVNAKGR------SEPTI 676
            |         |.|..:|....|.:.|.|...|..::      :||.:.|      ::||:
Mouse   615 TKSMLLKKIGLILRSSIVNPGTELLFQIIQSDLQSS------SVNTETREMLFEITQPTV 668

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IVNP_001034052.2 V-set 79..188 CDD:462230 30/153 (20%)
Ig 210..281 CDD:472250 18/90 (20%)
Ig strand B 218..222 CDD:409353 1/3 (33%)
Ig strand C 232..236 CDD:409353 1/9 (11%)
Ig <317..392 CDD:472250 16/93 (17%)
Ig strand C 329..333 CDD:409353 1/21 (5%)
Ig strand E 355..359 CDD:409353 0/3 (0%)
Ig strand F 369..374 CDD:409353 0/4 (0%)
Ig strand G 385..388 CDD:409353 1/2 (50%)
Ig 411..479 CDD:472250 12/79 (15%)
Ig strand B 417..421 CDD:409353 0/3 (0%)
Ig strand C 431..435 CDD:409353 0/8 (0%)
Ig strand E 454..458 CDD:409353 1/3 (33%)
Ig strand F 468..473 CDD:409353 0/4 (0%)
Ig 494..576 CDD:472250 19/93 (20%)
Ig strand B 511..515 CDD:409353 0/3 (0%)
Ig strand C 525..529 CDD:409353 2/3 (67%)
Ig strand E 551..555 CDD:409353 0/3 (0%)
Ig strand F 566..570 CDD:409353 1/3 (33%)
fn3 593..675 CDD:394996 23/116 (20%)
Skint6NP_001096669.1 IGv domain 27..141 28/126 (22%)
Ig 28..141 CDD:472250 28/125 (22%)
Ig strand B 45..49 CDD:409353 1/3 (33%)
Ig strand C 61..65 CDD:409353 0/3 (0%)
Ig strand E 106..110 CDD:409353 1/3 (33%)
Ig strand F 120..125 CDD:409353 2/4 (50%)
Ig strand G 133..136 CDD:409353 0/2 (0%)
IGc domain 142..228 21/116 (18%)
Ig 160..220 CDD:472250 15/69 (22%)
Ig strand B 160..163 CDD:409353 1/2 (50%)
Ig strand C 173..177 CDD:409353 0/3 (0%)
Ig strand E 203..207 CDD:409353 1/4 (25%)
Ig strand F 214..219 CDD:409353 1/13 (8%)
transmembrane domain 1 1087..1104
transmembrane domain 2 1164..1186
transmembrane domain 3 1206..1228
Blue background indicates that the domain is not in the aligned region.

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