DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-IV and syg-2

DIOPT Version :9

Sequence 1:NP_001034052.2 Gene:side-IV / 41657 FlyBaseID:FBgn0038156 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_001309674.1 Gene:syg-2 / 181561 WormBaseID:WBGene00007750 Length:1230 Species:Caenorhabditis elegans


Alignment Length:1249 Identity:234/1249 - (18%)
Similarity:377/1249 - (30%) Gaps:506/1249 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 STYVEQDELMQNLDRPVPLTTVQGVLGRQAMLPCDISPQERDDAVYMVLWFREGDGEPIYNFDVR 124
            |.|.....:....:.|:.:|.|         :| ::.|:..      |||:.:|        .|.
 Worm   132 SNYQPNSIIAVKENTPLNITCV---------VP-NVKPEPE------VLWYMDG--------KVM 172

  Fly   125 GRQFGQARLWSSPTAFGTRAHFSST-THPAQLKIDNIRIEDEGVYRCRVDFRNSPTRNLKINLT- 187
            .|...||   |:|       |.:.| |....|.:.:.|.:...|..|.. |:......:..|.| 
 Worm   173 SRDVKQA---STP-------HLNKTFTVYTSLVVQSDRNDHGKVITCEA-FQKETDIRITTNTTL 226

  Fly   188 -VIVPPDRPVIYGQNRHEKAGNVESFSEGNDIVLSCEVSGGRPRPNVTWYLDNTAIDESFEQRPD 251
             |:.||..|.:      |...|..:...|:::.::|.|:||.|.|:|.||.:|..:.........
 Worm   227 DVLFPPSDPTV------EILRNPSALRSGDNVTIACSVTGGNPPPDVFWYHENKRLQSHSTLDTR 285

  Fly   252 GKTINHLSYPNVGRQHLN-SRLMCVASNTNLTPPNNRVVILDVNLKPIAVHIL------------ 303
            .|.|.:: |..:..|:.| :...|.|:|:....|..:.:.|:||..|.:|.:.            
 Worm   286 SKEIKNI-YSFIASQNDNMAEYECRANNSRTGNPKRKAMKLEVNYPPASVELFGESNIRYGSSAN 349

  Fly   304 --------------------------TKDRFV--------------------------------- 309
                                      |:..||                                 
 Worm   350 IQCKSLPSNPASQITWIINGRSVPTPTQREFVVENGIVSSSNVSVHSNELSVEAHQINVECMATN 414

  Fly   310 ----SA--------------------DRTY------DVECKSSGSKPPALITWWKGS-KQLKKLT 343
                ||                    ||.:      :|.|::.|..|.|.::|::|| |.|.|..
 Worm   415 PEGSSAKQHVIKIIAPPKAPIITGLEDRKFFEGDIVNVTCEAQGGNPLAELSWYRGSEKHLVKGR 479

  Fly   344 KNF-----NEPDNQ-----SLSILTFTPGREDDGKYLTCRAENQFIDGSAIEDKWRLIVHYQPTT 398
            |..     |...|:     |.|.|.....|..:.:.|.|.|.|..:|...||.:: |.|:|.|..
 Worm   480 KKMKWSQVNGAHNEVAGFSSYSTLALRVDRTMNTQRLKCEATNAALDEPLIESQY-LSVYYPPRR 543

  Fly   399 T-----------LKIGSSL---------NP------------DDIK------------------- 412
            .           |.:|.|.         ||            ||.|                   
 Worm   544 VLIRPADSGDQRLLVGKSARLVCGTLSSNPAAHISWQFSRATDDNKVHLGDVSLNETTRDNGFNV 608

  Fly   413 ----------EGDDAYFECI--------------------------------------------- 422
                      |.|.....||                                             
 Worm   609 ENVLSFTPTEEYDGTVVHCIANHPEWKHSVNTSFPLNVMYPPKMLVNDPVTVVMSEGDSFKENLT 673

  Fly   423 VLANPKPYKMSWFHNGKELQHNI----SAGVILSDQSLVLQSVSRASAGDYTCLAVNSEGKGPSN 483
            |..||......|..||....|.|    :.|.:||.:.|:     ...||.||..|.||.|   |.
 Worm   674 VRGNPAISLWQWRKNGVPFDHTIGRVFARGAVLSGKQLL-----STDAGVYTLTATNSVG---ST 730

  Fly   484 PVTLR--IRYAPICATDHEELLGALKHETLPLKCEVDSSP-PADSFQW----------------- 528
            .:|::  :.|:....:....::.| ..:|:.|:||.|..| .|:...|                 
 Worm   731 NITIKLAVEYSARITSISTPVIAA-TGDTVLLECEADGEPSKANMIHWYKNGEILAAQHRGHKKA 794

  Fly   529 ------TFNSSGEQT------------------------ELPARLHSSETGM--------SRLNY 555
                  |...|||.|                        .||...::...|:        .::..
 Worm   795 ILRLNATEQQSGEYTCKADNGIGVPAEGQTFLLVNSAPRVLPVARYAKTAGILGGVAKARCKVYA 859

  Fly   556 TP-----------------------STDLDYGT------------------ISCWAKNSIGTQKS 579
            .|                       :|.:||.|                  :.|.|:||.||.. 
 Worm   860 VPTVEFVWEKDEQLIKKNSSKYSIVNTQIDYSTYESTLWIKNIVPDDYTKKVKCIARNSFGTDH- 923

  Fly   580 PCVFQIVAAGRPFPLQNCSVTNQSVDSLQVDCLEGFDGGLPQGFMLELVELNTLRLARNITVSHT 644
             ....|:....|....|.::||.:::::.|.....||||..|.|.::....|. .|...:..:||
 Worm   924 -LSIPIIPPTHPDEPFNLTMTNSTLNTISVAWEPRFDGGSDQIFEVKYRRQND-DLIHLVNTTHT 986

  Fly   645 PVTFVIDNLDQAATYRMVIFAVNAKG----RSEPTIIDDINFKG--VAKFTGASTGLSMPLSPFL 703
            .:.  :..|..|.||...|.::||:|    .:.|.|...:|..|  ||........|:..:...|
 Worm   987 NLR--LSGLATANTYFFQIRSINARGFASSWTSPVIFATLNEDGVNVAMIRNEKLKLTTWIPYIL 1049

  Fly   704 AGLTLFCGLLFAIFCIMLAAIYRRISNRRSDSNLKVAKHTQLTIPADCQLDPLHPGVQTDGSGNH 768
            ..:.||..|...|.|.        :.||.....|:  :.|::                       
 Worm  1050 IFIVLFMLLNVVICCF--------VCNRTKKRKLR--EKTEM----------------------- 1081

  Fly   769 QPHHSLLPLNCDGRNAVDCGALGDVGGGGVGVGLDGGIKGSSPIGLVAMPGDTLRSNARNRHSPM 833
                        .|.|::.|.:..|...|..:|.||                             
 Worm  1082 ------------ARTAINGGDVRQVQMYGTMMGNDG----------------------------- 1105

  Fly   834 ADQADIDDTDPDVIPNQYEKRPLKSLVSPPGFASP-------SNRLMQRDYLRETELTKGGSDVG 891
            ..:.||||. |::..:::..|.:.. |||.|:..|       |..|::.||...:.         
 Worm  1106 MSRRDIDDR-PEMSEDEHSVRTMIE-VSPNGYMQPIEPMLYESTGLLEYDYQTRSY--------- 1159

  Fly   892 MGAAEGLSSIGLMSSSGNEVLHYTFRPSKQISYATLNKKGITTCSPPLGSLNYSVSTSTPTSSYH 956
            ||:::|                     ::.::||     .:....||..|.:.:.::....|:.:
 Worm  1160 MGSSQG---------------------TRSMTYA-----NVPYPEPPQPSYHSNWNSLQRQSNNN 1198

  Fly   957 LTPQPMEVSLLSPN 970
            .:||....:.::||
 Worm  1199 TSPQHHLSTFINPN 1212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IVNP_001034052.2 V-set 79..188 CDD:284989 24/111 (22%)
IG_like 80..188 CDD:214653 23/110 (21%)
Ig 210..281 CDD:299845 19/71 (27%)
Ig 319..392 CDD:299845 25/83 (30%)
IG_like 319..383 CDD:214653 22/74 (30%)
IG_like 412..489 CDD:214653 27/156 (17%)
IGc2 413..478 CDD:197706 23/113 (20%)
Ig_3 509..572 CDD:290638 23/159 (14%)
fn3 593..675 CDD:278470 22/85 (26%)
syg-2NP_001309674.1 IG_like 25..105 CDD:214653
Ig 33..122 CDD:299845
Ig 147..228 CDD:299845 25/115 (22%)
IGc2 248..313 CDD:197706 18/65 (28%)
Ig 450..537 CDD:299845 26/87 (30%)
Ig 559..632 CDD:299845 11/72 (15%)
I-set 657..738 CDD:254352 22/88 (25%)
Ig 665..738 CDD:299845 22/80 (28%)
IG_like 748..828 CDD:214653 14/80 (18%)
IGc2 756..817 CDD:197706 13/60 (22%)
Ig 845..922 CDD:299845 11/76 (14%)
FN3 934..1023 CDD:238020 25/91 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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