DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-IV and prtg

DIOPT Version :10

Sequence 1:NP_001034052.2 Gene:side-IV / 41657 FlyBaseID:FBgn0038156 Length:1001 Species:Drosophila melanogaster
Sequence 2:XP_004912757.1 Gene:prtg / 100496178 XenbaseID:XB-GENE-922463 Length:1173 Species:Xenopus tropicalis


Alignment Length:860 Identity:172/860 - (20%)
Similarity:279/860 - (32%) Gaps:250/860 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   296 KPIAVHILTKDRFVSADRTYDVECKSSGSKPPALITWWKGSKQLKKLTKNFNEPDNQSLSILTFT 360
            :|..|.||.:|..|       ::|.::| :.|..:||.|...::.: .:..:...|.||.|.. .
 Frog    35 EPQDVIILRRDSVV-------LDCLANG-EAPITVTWMKNGVKISE-NERISTLHNGSLYIRE-A 89

  Fly   361 PGRE----DDGKYLTCRAENQFIDGSAIEDKWRLI------VHYQPTTTLKIGSSLNPDDIKEGD 415
            .||:    |:|.| .|.|.|:|  |:.:..:..|.      ...||.:.          .::.|.
 Frog    90 EGRKGDQSDEGFY-QCLALNKF--GAILSQRAHLSFASMSGFEEQPVSV----------QVQHGS 141

  Fly   416 DAYFECIVLANPKPYKMSWFHNGKELQHNISAGVILSDQSLVLQSVSRASAGDYTCLAVNSEGKG 480
            .|.|.|.:.||| |..::|..|...|...:....:||...|.:..|::..||:|.|:|.:...:.
 Frog   142 VARFSCKITANP-PAVITWEVNRTALPLAMDRITVLSKGVLQIYGVTKRDAGNYRCVATSVSNRR 205

  Fly   481 PS-------------NP--------VTLRIR-----YAPICATDHEELLGALKHETLPLKCEVDS 519
            .|             ||        :|||.:     ..|:.....:.:..:: |:::.|:|....
 Frog   206 KSTEAVLTVVPGERLNPRHHLSQTQLTLRAKEKKYFQKPVIIAPPQNITTSM-HQSVTLECVATG 269

  Fly   520 SP------------PADSFQWTFNSSGEQTELPARLHSSETGMSRL------NYTPS----TDLD 562
            :|            |.|.|......:|.......:.|.|...:.|.      |:|.:    |.|.
 Frog   270 NPKPIVSWSRRDHKPIDVFNTRVVGNGNLIISDVKPHHSGVYICRATTPGTRNFTVAMTTVTVLA 334

  Fly   563 YGTISCWAKNSIGTQKSPCVFQIVAAGRPFP----LQNCSVTNQS-----------------VDS 606
            ..:.:.|..:....:.|...|...|.|.|.|    |:|....|.:                 .|.
 Frog   335 PPSFTEWPASLTMPRASTARFVCQAEGNPVPKISWLKNGQKINSNGRIKMYNSKLVISHIMPEDD 399

  Fly   607 LQVDCL-EGFDGGL-----------------PQGFMLELVELNTLRLA----------------- 636
            ....|: |...|.:                 |:....|.:..:.:.|:                 
 Frog   400 AVYQCMAENSQGSVLSRARLIVVMYEHRPSAPRQLRAETMSSSAIILSWERPLYNSEKIIAYSVH 464

  Fly   637 -----------RNITVSHTPVTFVIDNLDQAATYRMVIFAVNAKGRSEPTIIDDINFKGVAKFTG 690
                       ..:.:.:....::||:||.|:.:...:.|....|.|:           ::....
 Frog   465 YMKAEGLNNEEYQVVIGNDTTHYIIDDLDPASNFTFYVVAYMPMGASQ-----------MSDHVT 518

  Fly   691 ASTGLSMPLSPFLAGLTLFCGLLFAIFCIMLAAIYR-------RISNRRSDSNLKVAKHTQLTIP 748
            .||...:||......||........|..:.::|.:|       |:|.|.|..|   ..|      
 Frog   519 QSTLEDVPLRAPEISLTSRSPTDVLISWLPISAKFRRGKIIHYRLSYRMSTEN---TTH------ 574

  Fly   749 ADCQLDPLHPGVQTDGSGNHQPHHSLLPLNCDGRNAVDCGALGDVGGGGVGVGLDGGIKGSSPIG 813
                      .|:..|| .|:  :.|..||.|....|...|...||.|............|:.|.
 Frog   575 ----------NVELPGS-THE--YFLEGLNSDTLYLVRIAAATKVGWGESSAWTSHRTPKSTSIR 626

  Fly   814 LVAMPGDTLRSNARNRHS-PMADQADIDDTDPDVI---------PNQYEKRPLKSLVSPPGFASP 868
            ....|  .||.:..|..: .:..|.|.|||  ..|         ..|.|..|:  |:....|...
 Frog   627 APRSP--ELRLDPLNCTTITVRWQQDPDDT--ATIQGYKLYYKEEGQQESGPV--LLDVKDFDYN 685

  Fly   869 SNRLMQRDYLRETELTKGGSDVGMGAAEGLSSIGLMS--------------------SSGNEVLH 913
            ...|..|.......|.....|.|..|.:.:|:...:|                    ||.:..||
 Frog   686 IGGLDPRKKYHVRLLAYNNMDEGYQADQTVSTPVCVSAPDHVNPPPPPPHHLYAKANSSSSIYLH 750

  Fly   914 Y---TFRPSKQISYATLNKKGITTCSPPLGSLNYSVSTSTPTSSYHLTPQPMEVS---------- 965
            :   .|..:|.|:|.       ..|: |:|..|.|:.....|:..|:..|.:|.:          
 Frog   751 WGRPAFSSAKAINYT-------VRCN-PVGLQNASLVLYLQTTESHILLQDLEANKKYEFAVRLH 807

  Fly   966 ---LLSPNNPSVTSS 977
               |.||.:|.|..|
 Frog   808 VDLLSSPWSPVVYQS 822

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IVNP_001034052.2 V-set 79..188 CDD:462230
Ig 210..281 CDD:472250
Ig strand B 218..222 CDD:409353
Ig strand C 232..236 CDD:409353
Ig <317..392 CDD:472250 21/84 (25%)
Ig strand C 329..333 CDD:409353 1/3 (33%)
Ig strand E 355..359 CDD:409353 1/3 (33%)
Ig strand F 369..374 CDD:409353 2/4 (50%)
Ig strand G 385..388 CDD:409353 0/2 (0%)
Ig 411..479 CDD:472250 20/67 (30%)
Ig strand B 417..421 CDD:409353 2/3 (67%)
Ig strand C 431..435 CDD:409353 0/3 (0%)
Ig strand E 454..458 CDD:409353 1/3 (33%)
Ig strand F 468..473 CDD:409353 2/4 (50%)
Ig 494..576 CDD:472250 16/103 (16%)
Ig strand B 511..515 CDD:409353 1/3 (33%)
Ig strand C 525..529 CDD:409353 1/3 (33%)
Ig strand E 551..555 CDD:409353 1/9 (11%)
Ig strand F 566..570 CDD:409353 0/3 (0%)
fn3 593..675 CDD:394996 19/148 (13%)
prtgXP_004912757.1 Ig 30..121 CDD:472250 26/98 (27%)
Ig strand B 47..51 CDD:409353 1/10 (10%)
Ig strand C 60..64 CDD:409353 1/3 (33%)
Ig strand E 82..86 CDD:409353 2/3 (67%)
Ig strand F 101..106 CDD:409353 2/5 (40%)
Ig strand G 115..118 CDD:409353 0/2 (0%)
Ig 128..214 CDD:472250 23/96 (24%)
Ig strand B 143..147 CDD:409353 2/3 (67%)
Ig strand C 156..160 CDD:409353 0/3 (0%)
Ig strand E 179..183 CDD:409353 1/3 (33%)
Ig strand F 193..198 CDD:409353 2/4 (50%)
Ig strand G 207..210 CDD:409353 1/2 (50%)
Ig_3 243..316 CDD:464046 12/73 (16%)
I-set 336..421 CDD:400151 14/84 (17%)
Ig strand B 353..357 CDD:409353 1/3 (33%)
Ig strand C 366..370 CDD:409353 0/3 (0%)
Ig strand E 387..391 CDD:409353 0/3 (0%)
Ig strand F 401..406 CDD:409353 1/4 (25%)
Ig strand G 414..417 CDD:409353 0/2 (0%)
FN3 428..521 CDD:238020 11/103 (11%)
FN3 529..619 CDD:238020 24/111 (22%)
FN3 628..708 CDD:238020 19/85 (22%)
FN3 <687..>925 CDD:442628 31/144 (22%)
FN3 829..920 CDD:238020
Blue background indicates that the domain is not in the aligned region.

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