DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-IV and icam3

DIOPT Version :9

Sequence 1:NP_001034052.2 Gene:side-IV / 41657 FlyBaseID:FBgn0038156 Length:1001 Species:Drosophila melanogaster
Sequence 2:XP_002661307.2 Gene:icam3 / 100334824 ZFINID:ZDB-GENE-060503-219 Length:551 Species:Danio rerio


Alignment Length:587 Identity:120/587 - (20%)
Similarity:209/587 - (35%) Gaps:172/587 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 GNDIVLSCEVS------------GGRPRPN---VTWYLDNTAIDESFEQRPDGKTINHLSYPNVG 264
            |:.:.::|..|            ||.|...   :||.:         .|..|.:......|.|.|
Zfish    48 GDSVSVNCSTSVTHDGMGWESTKGGVPLSKASLITWRV---------SQLTDWEIEPPFCYINYG 103

  Fly   265 RQHLNSRLMCVASNTNLTPPNNRVVILDVNL--KPIAVHILTKDRFVSADRTYDVECKSSGSKPP 327
            :|.     .|             .|.|.|.:  .|.:|.|.|.::.::....|:::|......|.
Zfish   104 QQQ-----QC-------------EVALPVTIY
KTPDSVSISTANQAMTEGNQYELQCDIHNVAPA 150

  Fly   328 ALIT--WWKGSKQLKK--LTKNFNEPDNQSLSILTFTPGREDDGKYLTCRAE-NQFIDGSAIEDK 387
            ..:|  |:||...:.:  .|.|...|.|:.:. |...|.|.|||....|.|| |...:|.....|
Zfish   151 QNLTVNWYKGETLVNQTNFTDNTKSPVNKIIR-LPIHPDRADDGAQYRCEAELNLGEEGPQPHPK 214

  Fly   388 -----WRLIVHYQPTTTLKIGSSLNPDDIKEGDDAYFECIVLANPKPYKMSWFH-----NGKELQ 442
                 ..:.||::||.. |:.|:::   :..|......|....:||| .:||..     ||:.. 
Zfish   215 NTSEPL
SITVHFKPTIH-KLPSTVS---VVRGYSKVVVCKSEGHPKP-TISWSDGTNTVNGENF- 273

  Fly   443 HNISAGVILSDQSLVLQSVSRASAGDYTCLAVNSEGKGPSNPVTLRIRYAPICATDH-EELLGAL 506
                             :::.::|.:.||.|.|:.|.. |..||:.|:...|.|.:: |.::...
Zfish   274 -----------------TITESTAENLTCTATNAVGSS-SRSVTVVIQDFSISAVNYIEPMIEGN 320

  Fly   507 KHETLPLKCEVDSSPPADSFQWTFNSSGEQTELPARLHSSETGMSRLNYTPSTDLDYGTISCWAK 571
            ::|   |:|:|.:.|.|.|             |....:..||.:::.|:|               
Zfish   321 QYE---LQCDVYNVPAAQS-------------LTVNWYKGETLVTQTNFT--------------- 354

  Fly   572 NSIGTQKSPCVFQIVAAGRPFPLQNCSVTNQSVDSLQVDCLEGFDGGLPQGFMLELVELNTLRLA 636
               .|.:||.....:....|                     :.:|.|....|.|:.:|::.   :
Zfish   355 ---NTFESPVNKTFILLIHP---------------------KRYDDGAQYKFELKPLEISK---S 392

  Fly   637 RNITVSHTPV---TFVIDNLDQAATYRMVIFAVNAKGRSEPTII----DDINFKGVAKFTGASTG 694
            .||||:..||   |.:...:.....|.:.:..: |.|:.:|.|.    :.|.::.....|.::..
Zfish   393 VNITVNFKPVINETILPSVVPVFRGYPVNLSCI-ADGKPKPIISWKHKNGIIYREYLTVTESTPE 456

  Fly   695 --------------------LSMPLSPFLAGLTLFCGLLFAIFCIMLAAIYRRISNRRSDSNLKV 739
                                |.....|.:|||........::..|.:.:||.:.: :....:||.
Zfish   457 NVVCVANNSIDAVRREVKVILKEDYLPLIAGLIAITVAFISVIFIFIYSIYYKTA-KMGRYSLKD 520

  Fly   740 AK 741
            ||
Zfish   521 AK 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IVNP_001034052.2 V-set 79..188 CDD:284989
IG_like 80..188 CDD:214653
Ig 210..281 CDD:299845 15/80 (19%)
Ig 319..392 CDD:299845 22/82 (27%)
IG_like 319..383 CDD:214653 21/68 (31%)
IG_like 412..489 CDD:214653 18/81 (22%)
IGc2 413..478 CDD:197706 14/69 (20%)
Ig_3 509..572 CDD:290638 12/62 (19%)
fn3 593..675 CDD:278470 15/84 (18%)
icam3XP_002661307.2 ICAM_N 36..117 CDD:252248 18/95 (19%)
Ig2_ICAM-1_like 120..220 CDD:143232 27/100 (27%)
I-set 228..302 CDD:254352 22/97 (23%)
Ig 228..>261 CDD:299845 9/37 (24%)
Ig 249..302 CDD:299845 17/72 (24%)
Ig 306..>380 CDD:299845 21/128 (16%)
IG_like 409..476 CDD:214653 7/67 (10%)
Ig 422..478 CDD:299845 6/56 (11%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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